Wall clock time and date at job start Mon Mar 30 2020 02:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 89.99935 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00326 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00479 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 N 1.40105 * 119.99660 * 89.99925 * 12 2 1 14 14 C 1.29705 * 119.99589 * 180.02562 * 13 12 2 15 15 C 1.47567 * 120.00026 * 179.97438 * 14 13 12 16 16 C 1.41118 * 126.08009 * 179.70686 * 15 14 13 17 17 C 1.35005 * 107.83259 * 179.89184 * 16 15 14 18 18 N 1.35075 * 108.05167 * 0.37639 * 17 16 15 19 19 H 0.97001 * 125.90009 * 179.73477 * 18 17 16 20 20 N 1.31872 * 126.07422 * 0.03335 * 15 14 13 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 25 25 H 0.96998 * 120.00160 * 270.00687 * 12 2 1 26 26 H 1.07998 * 120.00197 * 359.97438 * 14 13 12 27 27 H 1.08000 * 126.07975 * 0.02562 * 16 15 14 28 28 H 1.07999 * 125.97595 * 180.14590 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5457 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 7 2.0184 -0.6906 -1.1961 13 7 2.2519 0.0299 -2.3747 14 6 2.6839 -0.5816 -3.4339 15 6 2.9293 0.1771 -4.6755 16 6 3.4021 -0.3541 -5.8944 17 6 3.4890 0.6601 -6.7813 18 7 3.0986 1.7941 -6.1600 19 1 3.0649 2.6781 -6.5580 20 7 2.7515 1.4733 -4.8415 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.7081 1.1610 3.4844 25 1 2.1800 -1.6468 -1.1721 26 1 2.8639 -1.6462 -3.4071 27 1 3.6482 -1.3883 -6.0845 28 1 3.8173 0.5794 -7.8070 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379410293.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:15 Heat of formation + Delta-G solvation = 113.537487 kcal Electronic energy + Delta-G solvation = -12615.829224 eV Core-core repulsion = 10283.522267 eV Total energy + Delta-G solvation = -2332.306957 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.75521 -36.38733 -34.06772 -31.96400 -30.45662 -29.76672 -27.27387 -25.20746 -23.27087 -21.07941 -20.17111 -19.06817 -17.97279 -16.75202 -15.63557 -15.00967 -14.42050 -14.12824 -13.39671 -13.31136 -12.76209 -12.44658 -12.36209 -11.46686 -11.01278 -10.88939 -10.62383 -10.46019 -10.21503 -10.18892 -9.48252 -9.32775 -8.95986 -8.63506 -8.47459 -6.85566 -6.10630 -4.18975 1.89265 2.43871 3.04370 3.26698 3.32794 3.35219 3.80050 3.83578 4.38935 4.92807 4.96294 5.21750 5.66549 5.81400 5.87257 6.25522 6.63002 6.83189 6.96521 7.05178 7.19559 7.42159 7.60714 7.78586 7.89105 7.94292 8.18694 8.33444 8.88554 9.36898 9.47682 10.95377 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.072850 B = 0.005522 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.258270 B = 5069.451248 C = 5210.432334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.296 3.704 3 H 0.043 0.957 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.620 5.620 13 N -0.170 5.170 14 C 0.009 3.991 15 C 0.148 3.852 16 C -0.260 4.260 17 C 0.049 3.951 18 N -0.486 5.486 19 H 0.436 0.564 20 N -0.270 5.270 21 H 0.026 0.974 22 H 0.013 0.987 23 H 0.090 0.910 24 H 0.264 0.736 25 H 0.369 0.631 26 H 0.116 0.884 27 H 0.148 0.852 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 -2.016 -14.975 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.194 3.806 3 H 0.061 0.939 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.358 5.358 13 N 0.014 4.986 14 C -0.201 4.201 15 C -0.018 4.018 16 C -0.291 4.291 17 C -0.098 4.098 18 N -0.194 5.194 19 H 0.279 0.721 20 N -0.097 5.097 21 H 0.045 0.955 22 H 0.032 0.968 23 H 0.109 0.891 24 H 0.074 0.926 25 H 0.205 0.795 26 H 0.133 0.867 27 H 0.165 0.835 28 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.062 0.150 -13.743 14.081 hybrid contribution 0.823 -1.995 -0.037 2.158 sum 3.885 -1.845 -13.779 14.435 Atomic orbital electron populations 1.22202 0.98942 0.99205 1.00623 1.18565 0.90217 0.93667 0.78175 0.93909 1.21241 1.32229 1.13295 0.90199 0.92134 1.24863 0.94833 0.95021 0.98955 1.69896 1.35975 1.22588 1.23893 0.86417 0.78581 0.79848 0.82070 1.20546 1.21046 1.19870 1.49130 1.71978 1.07827 1.06818 1.74078 1.02712 1.27878 0.93898 1.22497 1.11380 0.96012 0.90226 1.20337 0.97891 0.90481 0.93128 1.21458 1.14269 1.00523 0.92819 1.22407 1.01263 0.86913 0.99209 1.46440 1.53760 1.09532 1.09714 0.72110 1.77946 1.22799 1.14918 0.94005 0.95496 0.96767 0.89143 0.92566 0.79496 0.86691 0.83457 0.81023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.29 37.16 0.35 -3.48 15 2 C 0.30 7.80 3.23 -69.08 -0.22 7.58 15 3 H 0.04 1.26 8.14 -51.93 -0.42 0.84 15 4 C -0.53 -14.51 8.74 -34.44 -0.30 -14.81 15 5 H 0.06 1.61 7.79 -52.49 -0.41 1.20 15 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 15 7 N -0.89 -25.14 11.32 55.43 0.63 -24.51 15 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 15 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 11 H -0.27 -6.26 7.11 56.52 0.40 -5.85 15 12 N -0.62 -14.27 6.10 -5.88 -0.04 -14.30 15 13 N -0.17 -3.76 11.45 32.17 0.37 -3.39 15 14 C 0.01 0.17 11.01 -14.65 -0.16 0.00 15 15 C 0.15 2.50 7.09 -82.95 -0.59 1.92 15 16 C -0.26 -3.27 10.77 -39.64 -0.43 -3.69 15 17 C 0.05 0.49 11.96 -17.27 -0.21 0.28 15 18 N -0.49 -5.86 7.34 30.41 0.22 -5.64 15 19 H 0.44 3.64 8.96 -182.62 -1.64 2.00 15 20 N -0.27 -4.75 12.71 33.32 0.42 -4.32 15 21 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 15 23 H 0.09 2.46 6.07 -51.93 -0.32 2.14 15 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 25 H 0.37 7.69 8.58 -182.60 -1.57 6.13 15 26 H 0.12 1.76 8.02 -52.49 -0.42 1.34 15 27 H 0.15 1.46 8.06 -52.49 -0.42 1.04 15 28 H 0.17 0.92 8.06 -52.49 -0.42 0.50 15 LS Contribution 255.45 15.07 3.85 3.85 Total: -1.00 -32.01 255.45 -6.82 -38.83 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.60 Total: 3.98 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.66 Total: -10.49 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 1.61 Total: -52.17 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.01 -6.82 -38.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379410293.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.369 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds