Wall clock time and date at job start Mon Mar 30 2020 02:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 N 1.40105 * 120.00129 * 270.00290 * 12 2 1 14 14 C 1.29685 * 120.00024 * 180.02562 * 13 12 2 15 15 C 1.47610 * 120.00093 * 179.97438 * 14 13 12 16 16 C 1.46898 * 127.15258 * 179.97438 * 15 14 13 17 17 C 1.34302 * 106.02997 * 179.97438 * 16 15 14 18 18 O 1.34162 * 109.08035 * 359.97438 * 17 16 15 19 19 C 1.34129 * 110.79677 * 359.75359 * 18 17 16 20 20 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 0.96998 * 120.00346 * 90.00694 * 12 2 1 25 25 H 1.08006 * 120.00316 * 359.97438 * 14 13 12 26 26 H 1.08000 * 126.97909 * 359.97438 * 16 15 14 27 27 H 1.07999 * 125.45919 * 180.02562 * 17 16 15 28 28 H 1.07998 * 125.80659 * 180.28485 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 7 2.2517 0.0301 2.3748 14 6 2.6845 -0.5811 3.4336 15 6 2.9310 0.1781 4.6752 16 6 3.4169 -0.3505 5.9568 17 6 3.4870 0.7011 6.7891 18 8 3.0931 1.8047 6.1356 19 6 2.7618 1.5151 4.8686 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7088 1.1611 -3.4845 24 1 2.1801 -1.6466 1.1723 25 1 2.8645 -1.6458 3.4069 26 1 3.6669 -1.3765 6.1834 27 1 3.8096 0.6645 7.8191 28 1 2.4169 2.2218 4.1284 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388657348.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:59 Heat of formation + Delta-G solvation = 51.233573 kcal Electronic energy + Delta-G solvation = -12635.452114 eV Core-core repulsion = 10268.150705 eV Total energy + Delta-G solvation = -2367.301409 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.04464 -36.46823 -34.27075 -32.56963 -31.01614 -29.32117 -27.02648 -25.23297 -22.93338 -21.29647 -20.31231 -19.44407 -17.43770 -16.53686 -15.69603 -15.65912 -15.01238 -14.54502 -13.71228 -12.79833 -12.67606 -12.53559 -12.38653 -12.00267 -11.52123 -11.04680 -10.92913 -10.67169 -10.26696 -10.22606 -9.51888 -9.44545 -9.02222 -8.59979 -8.45953 -6.76463 -6.14125 -4.22536 1.84551 2.29055 3.25279 3.29422 3.30044 3.31830 3.66856 3.81616 4.36177 4.93692 5.09085 5.18131 5.47218 5.67905 5.83369 6.28433 6.36464 6.58489 6.75852 6.97817 6.99824 7.15285 7.34809 7.57573 7.77778 7.86390 8.15448 8.31259 8.85240 9.35357 9.44368 10.91728 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.072344 B = 0.005500 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.947863 B = 5089.703065 C = 5230.868500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.298 3.702 3 H 0.041 0.959 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.626 5.626 13 N -0.205 5.205 14 C 0.022 3.978 15 C -0.114 4.114 16 C -0.205 4.205 17 C -0.046 4.046 18 O -0.188 6.188 19 C -0.018 4.018 20 H 0.025 0.975 21 H 0.012 0.988 22 H 0.090 0.910 23 H 0.265 0.735 24 H 0.368 0.632 25 H 0.101 0.899 26 H 0.149 0.851 27 H 0.199 0.801 28 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.222 -1.390 13.214 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.196 3.804 3 H 0.059 0.941 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.731 3.269 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.363 5.363 13 N -0.018 5.018 14 C -0.187 4.187 15 C -0.118 4.118 16 C -0.226 4.226 17 C -0.113 4.113 18 O -0.085 6.085 19 C -0.089 4.089 20 H 0.045 0.955 21 H 0.031 0.969 22 H 0.108 0.892 23 H 0.075 0.925 24 H 0.204 0.796 25 H 0.118 0.882 26 H 0.167 0.833 27 H 0.215 0.785 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.773 -0.014 12.610 12.911 hybrid contribution 0.571 -2.026 -0.773 2.242 sum 3.344 -2.040 11.837 12.468 Atomic orbital electron populations 1.22210 0.99061 0.99193 1.00519 1.18513 0.90108 0.93521 0.78291 0.94094 1.21211 1.32293 1.13318 0.90261 0.92259 1.24862 0.94815 0.95008 0.98945 1.69882 1.35966 1.22529 1.24027 0.86478 0.79187 0.79596 0.81677 1.21055 1.20169 1.20171 1.48990 1.72883 1.07704 1.06712 1.73841 1.05420 1.28327 0.94177 1.22632 1.08791 0.96385 0.90891 1.19819 1.06137 0.92758 0.93071 1.22781 1.07073 1.00020 0.92694 1.23743 1.04940 0.83999 0.98573 1.83855 1.65894 1.35805 1.22898 1.24333 1.03830 0.96900 0.83802 0.95545 0.96875 0.89159 0.92493 0.79598 0.88172 0.83332 0.78453 0.77477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.29 37.16 0.35 -3.40 15 2 C 0.30 7.69 3.23 -69.09 -0.22 7.46 15 3 H 0.04 1.17 8.14 -51.92 -0.42 0.75 15 4 C -0.53 -14.42 8.74 -34.44 -0.30 -14.72 15 5 H 0.06 1.57 7.79 -52.49 -0.41 1.16 15 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 15 7 N -0.89 -24.81 11.32 55.43 0.63 -24.18 15 8 Si 0.90 20.86 29.54 -169.99 -5.02 15.83 15 9 H -0.29 -6.51 7.11 56.52 0.40 -6.11 15 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 15 12 N -0.63 -14.16 6.10 -5.88 -0.04 -14.19 15 13 N -0.20 -4.28 11.26 32.18 0.36 -3.92 15 14 C 0.02 0.39 11.06 -14.63 -0.16 0.23 15 15 C -0.11 -1.79 6.31 -103.32 -0.65 -2.44 15 16 C -0.20 -2.56 11.15 -37.47 -0.42 -2.98 15 17 C -0.05 -0.51 12.04 29.34 0.35 -0.15 15 18 O -0.19 -2.54 10.55 6.55 0.07 -2.47 15 19 C -0.02 -0.26 11.86 29.98 0.36 0.09 15 20 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 15 22 H 0.09 2.41 6.07 -51.93 -0.32 2.09 15 23 H 0.27 7.04 8.31 -40.82 -0.34 6.71 15 24 H 0.37 7.73 8.58 -182.60 -1.57 6.16 15 25 H 0.10 1.61 8.02 -52.48 -0.42 1.19 15 26 H 0.15 1.50 8.06 -52.49 -0.42 1.08 15 27 H 0.20 1.31 8.06 -52.49 -0.42 0.88 15 28 H 0.21 2.88 8.06 -52.49 -0.42 2.46 15 LS Contribution 256.44 15.07 3.86 3.86 Total: -1.00 -29.35 256.44 -5.31 -34.67 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.38 Total: 4.60 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -0.80 Total: -14.20 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.95 Total: -42.30 kcal Atomic # 8 Polarization: -2.54 SS G_CDS: 0.07 Total: -2.47 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.35 -5.31 -34.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388657348.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.899 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds