Wall clock time and date at job start Mon Mar 30 2020 02:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 N 1.40105 * 120.00129 * 270.00290 * 12 2 1 14 14 C 1.29685 * 120.00024 * 180.02562 * 13 12 2 15 15 C 1.47610 * 120.00093 * 179.97438 * 14 13 12 16 16 C 1.46898 * 127.15258 * 179.97438 * 15 14 13 17 17 C 1.34302 * 106.02997 * 179.97438 * 16 15 14 18 18 O 1.34162 * 109.08035 * 359.97438 * 17 16 15 19 19 C 1.34129 * 110.79677 * 359.75359 * 18 17 16 20 20 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 0.96998 * 120.00346 * 90.00694 * 12 2 1 25 25 H 1.08006 * 120.00316 * 359.97438 * 14 13 12 26 26 H 1.08000 * 126.97909 * 359.97438 * 16 15 14 27 27 H 1.07999 * 125.45919 * 180.02562 * 17 16 15 28 28 H 1.07998 * 125.80659 * 180.28485 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 7 2.2517 0.0301 2.3748 14 6 2.6845 -0.5811 3.4336 15 6 2.9310 0.1781 4.6752 16 6 3.4169 -0.3505 5.9568 17 6 3.4870 0.7011 6.7891 18 8 3.0931 1.8047 6.1356 19 6 2.7618 1.5151 4.8686 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7088 1.1611 -3.4845 24 1 2.1801 -1.6466 1.1723 25 1 2.8645 -1.6458 3.4069 26 1 3.6669 -1.3765 6.1834 27 1 3.8096 0.6645 7.8191 28 1 2.4169 2.2218 4.1284 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388657348.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:58 Heat of formation + Delta-G solvation = 32.132490 kcal Electronic energy + Delta-G solvation = -12636.280399 eV Core-core repulsion = 10268.150705 eV Total energy + Delta-G solvation = -2368.129694 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.10201 -38.12003 -36.04853 -34.04196 -32.63266 -30.56414 -28.65587 -27.29965 -24.37698 -22.42722 -22.07780 -20.71731 -18.90867 -18.06436 -17.32213 -16.90431 -16.75078 -15.80119 -15.29760 -14.53778 -14.36085 -13.90411 -13.60987 -13.39929 -13.12779 -12.88222 -12.77946 -12.55448 -12.24479 -12.09812 -11.18712 -10.92225 -10.69960 -10.52135 -9.64151 -8.40426 -8.17503 -6.35676 0.59963 1.28813 1.42651 1.44628 1.52545 2.14813 2.33231 2.35770 2.48417 3.10379 3.89367 3.96866 4.35930 4.54263 4.69688 4.81825 4.97336 5.08700 5.12521 5.24263 5.38939 5.53863 5.62055 5.77432 5.86398 6.16609 6.31041 6.41572 6.84071 7.35946 7.78496 8.86571 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.072344 B = 0.005500 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.947863 B = 5089.703065 C = 5230.868500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.308 3.692 3 H 0.001 0.999 4 C -0.551 4.551 5 H 0.061 0.939 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.971 3.029 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.268 1.268 12 N -0.643 5.643 13 N -0.252 5.252 14 C 0.060 3.940 15 C -0.151 4.151 16 C -0.212 4.212 17 C -0.029 4.029 18 O -0.193 6.193 19 C -0.019 4.019 20 H 0.029 0.971 21 H 0.018 0.982 22 H 0.069 0.931 23 H 0.267 0.733 24 H 0.373 0.627 25 H 0.119 0.881 26 H 0.174 0.826 27 H 0.247 0.753 28 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 -2.414 14.823 15.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.204 3.796 3 H 0.019 0.981 4 C -0.590 4.590 5 H 0.079 0.921 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.795 3.205 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.192 1.192 12 N -0.381 5.381 13 N -0.062 5.062 14 C -0.151 4.151 15 C -0.155 4.155 16 C -0.233 4.233 17 C -0.095 4.095 18 O -0.089 6.089 19 C -0.090 4.090 20 H 0.049 0.951 21 H 0.037 0.963 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.210 0.790 25 H 0.136 0.864 26 H 0.192 0.808 27 H 0.263 0.737 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.724 -1.041 14.244 14.759 hybrid contribution 0.352 -1.669 -0.981 1.968 sum 4.075 -2.710 13.262 14.137 Atomic orbital electron populations 1.22028 0.98822 0.99061 0.99676 1.18105 0.90251 0.91604 0.79655 0.98084 1.21513 1.32636 1.13593 0.91234 0.92094 1.25722 0.94847 0.95649 1.01934 1.70009 1.36760 1.23706 1.24783 0.85419 0.78576 0.78672 0.77793 1.20557 1.19804 1.19246 1.48484 1.75137 1.07608 1.06833 1.73889 1.08998 1.28802 0.94524 1.23187 1.03941 0.97495 0.90445 1.20059 1.08346 0.93426 0.93650 1.23087 1.07219 1.01786 0.91158 1.24696 1.02367 0.82518 0.99934 1.83886 1.65759 1.37011 1.22262 1.24422 1.03179 0.96853 0.84537 0.95139 0.96341 0.91198 0.92343 0.79025 0.86390 0.80839 0.73711 0.77680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.99 9.29 71.98 0.67 -6.32 15 2 C 0.31 16.42 3.23 44.24 0.14 16.57 15 3 H 0.00 0.08 8.14 -2.38 -0.02 0.06 15 4 C -0.55 -30.42 8.74 25.60 0.22 -30.19 15 5 H 0.06 3.25 7.79 -2.91 -0.02 3.23 15 6 C 0.02 1.03 5.30 84.66 0.45 1.48 15 7 N -0.91 -52.21 11.32 21.45 0.24 -51.97 15 8 Si 0.97 42.80 29.54 68.60 2.03 44.82 15 9 H -0.28 -12.04 7.11 99.48 0.71 -11.34 15 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 11 H -0.27 -11.35 7.11 99.48 0.71 -10.65 15 12 N -0.64 -29.71 6.10 -172.53 -1.05 -30.77 15 13 N -0.25 -10.68 11.26 -52.10 -0.59 -11.26 15 14 C 0.06 2.06 11.06 87.49 0.97 3.02 15 15 C -0.15 -4.48 6.31 -19.02 -0.12 -4.60 15 16 C -0.21 -4.58 11.15 23.64 0.26 -4.32 15 17 C -0.03 -0.53 12.04 66.92 0.81 0.27 15 18 O -0.19 -4.72 10.55 0.54 0.01 -4.71 15 19 C -0.02 -0.53 11.86 67.33 0.80 0.27 15 20 H 0.03 1.47 8.14 -2.39 -0.02 1.45 15 21 H 0.02 0.86 8.14 -2.39 -0.02 0.85 15 22 H 0.07 3.84 6.07 -2.39 -0.01 3.83 15 23 H 0.27 14.40 8.31 -92.71 -0.77 13.63 15 24 H 0.37 15.86 8.58 -213.32 -1.83 14.03 15 25 H 0.12 3.58 8.02 -2.91 -0.02 3.56 15 26 H 0.17 2.78 8.06 -2.91 -0.02 2.76 15 27 H 0.25 1.84 8.06 -2.91 -0.02 1.82 15 28 H 0.21 5.77 8.06 -2.91 -0.02 5.75 15 Total: -1.00 -64.00 256.44 4.17 -59.84 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -0.67 Total: 17.87 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 4.20 Total: -23.82 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -1.40 Total: -94.00 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: 0.01 Total: -4.71 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -64.00 4.17 -59.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388657348.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.971 kcal (2) G-P(sol) polarization free energy of solvation -64.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds