Wall clock time and date at job start Mon Mar 30 2020 02:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86800 * 119.99735 * 2 1 4 4 H 1.48505 * 109.46945 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46925 * 299.99824 * 3 2 1 6 6 H 1.48489 * 109.47487 * 60.00019 * 3 2 1 7 7 C 1.40460 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99917 * 179.97438 * 7 2 1 9 9 C 1.41026 * 119.99858 * 359.97438 * 7 2 1 10 10 O 1.21434 * 120.00326 * 0.02562 * 9 7 2 11 11 C 1.50702 * 119.99815 * 179.97438 * 9 7 2 12 12 C 1.52951 * 109.41251 * 210.00498 * 11 9 7 13 13 C 1.53179 * 109.44734 * 176.90938 * 12 11 9 14 14 C 1.53147 * 108.88655 * 56.56620 * 13 12 11 15 15 C 1.52841 * 117.67569 * 91.49469 * 14 13 12 16 16 C 1.52806 * 117.74825 * 160.37823 * 14 13 12 17 17 C 1.53147 * 115.00654 * 306.06267 * 14 13 12 18 18 C 1.52934 * 109.41196 * 89.64610 * 11 9 7 19 19 H 0.97000 * 119.99951 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.35412 * 329.81898 * 11 9 7 21 21 H 1.08998 * 109.47971 * 56.90627 * 12 11 9 22 22 H 1.09004 * 109.46635 * 296.89817 * 12 11 9 23 23 H 1.09001 * 109.56649 * 296.74231 * 13 12 11 24 24 H 1.08999 * 109.56825 * 176.39267 * 13 12 11 25 25 H 1.09002 * 117.50783 * 0.27023 * 15 14 13 26 26 H 1.09008 * 117.50386 * 215.22396 * 15 14 13 27 27 H 1.09001 * 117.50504 * 144.89350 * 16 14 13 28 28 H 1.09001 * 117.52712 * 359.83898 * 16 14 13 29 29 H 1.08996 * 109.57213 * 173.75440 * 17 14 13 30 30 H 1.08998 * 109.56916 * 294.11313 * 17 14 13 31 31 H 1.09005 * 109.47136 * 303.08157 * 18 11 9 32 32 H 1.08995 * 109.47675 * 63.09462 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.6992 1.3464 -0.0006 5 1 1.8803 2.3964 -1.2126 6 1 1.8804 2.3965 1.2124 7 6 2.0075 -1.2164 0.0005 8 1 3.0875 -1.2164 0.0001 9 6 1.3024 -2.4377 0.0016 10 8 0.0880 -2.4378 0.0016 11 6 2.0559 -3.7428 0.0016 12 6 1.2277 -4.8080 -0.7186 13 6 2.0251 -6.1141 -0.7869 14 6 2.4132 -6.5329 0.6341 15 6 1.4606 -7.4624 1.3855 16 6 2.7983 -7.9934 0.8653 17 6 3.1513 -5.4638 1.4452 18 6 2.3189 -4.1779 1.4440 19 1 -0.4850 0.8400 0.0004 20 1 3.0061 -3.6114 -0.5162 21 1 0.9986 -4.4688 -1.7288 22 1 0.2994 -4.9770 -0.1727 23 1 2.9258 -5.9613 -1.3814 24 1 1.4127 -6.8923 -1.2425 25 1 0.5563 -7.7821 0.8676 26 1 1.3604 -7.3178 2.4613 27 1 3.5781 -8.1984 1.5989 28 1 2.7740 -8.6630 0.0055 29 1 3.2856 -5.8108 2.4697 30 1 4.1240 -5.2695 0.9933 31 1 2.8637 -3.3919 1.9670 32 1 1.3695 -4.3591 1.9478 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575512280.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:06 Heat of formation + Delta-G solvation = -46.919339 kcal Electronic energy + Delta-G solvation = -13786.629211 eV Core-core repulsion = 11518.611917 eV Total energy + Delta-G solvation = -2268.017295 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.07883 -36.72183 -33.71742 -32.45644 -30.36811 -27.92109 -26.07553 -22.36018 -22.20122 -21.40484 -19.11232 -17.90577 -16.26180 -15.28503 -15.04820 -14.66331 -13.75109 -13.35254 -13.07284 -12.77482 -12.34654 -11.83970 -11.70732 -11.55142 -11.36670 -11.22751 -11.07238 -10.67297 -10.41348 -10.29771 -10.17480 -9.81667 -9.50635 -9.41132 -9.21938 -8.86043 -7.23614 -6.13677 -4.82061 3.06553 3.16806 3.21571 4.02147 4.07899 4.30552 4.90133 5.05832 5.14600 5.35602 5.44522 5.76253 5.78802 5.86762 5.91519 6.04908 6.09519 6.11068 6.15277 6.30969 6.43445 6.47806 6.52278 6.65439 6.86099 6.88133 7.02928 7.19062 7.28880 7.33462 8.17269 8.90634 9.00512 10.42884 10.68426 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.063157 B = 0.007765 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.230774 B = 3604.918398 C = 3769.716062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.083 3.917 3 Si 0.901 3.099 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.370 3.630 10 O -0.546 6.546 11 C -0.124 4.124 12 C -0.094 4.094 13 C -0.081 4.081 14 C -0.111 4.111 15 C -0.175 4.175 16 C -0.185 4.185 17 C -0.080 4.080 18 C -0.095 4.095 19 H 0.271 0.729 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.875 -9.078 1.298 10.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.264 3.736 10 O -0.434 6.434 11 C -0.144 4.144 12 C -0.132 4.132 13 C -0.118 4.118 14 C -0.111 4.111 15 C -0.212 4.212 16 C -0.222 4.222 17 C -0.117 4.117 18 C -0.132 4.132 19 H 0.082 0.918 20 H 0.081 0.919 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.115 -9.034 1.296 10.462 hybrid contribution 0.634 0.762 0.018 0.991 sum 5.750 -8.272 1.314 10.159 Atomic orbital electron populations 1.69971 1.07478 1.27608 1.32137 1.26022 0.94535 1.00841 0.92549 0.86419 0.80925 0.81728 0.78417 1.18485 1.19963 1.19965 1.20896 0.94823 0.92088 1.48995 0.91425 1.19470 0.88846 0.87515 0.77790 1.90381 1.15709 1.88853 1.48473 1.21608 0.99674 0.97983 0.95127 1.21279 0.98548 0.92979 1.00379 1.21202 0.99621 0.97966 0.93020 1.21525 1.01984 0.90400 0.97193 1.22962 0.93682 1.04487 1.00081 1.22974 0.98775 0.97322 1.03108 1.21188 0.98172 0.94570 0.97766 1.21298 0.99474 0.95326 0.97130 0.91836 0.91914 0.92639 0.91783 0.92070 0.92750 0.89172 0.89197 0.89340 0.89345 0.92665 0.91892 0.91899 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.92 11.72 55.57 0.65 -21.27 16 2 C 0.08 2.29 5.50 -17.27 -0.10 2.20 16 3 Si 0.90 19.79 29.56 -169.99 -5.03 14.77 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.54 -15.11 9.19 -37.69 -0.35 -15.46 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.37 10.41 5.96 -33.25 -0.20 10.22 16 10 O -0.55 -17.44 14.76 5.42 0.08 -17.36 16 11 C -0.12 -2.77 2.33 -91.83 -0.21 -2.98 16 12 C -0.09 -1.92 4.75 -26.66 -0.13 -2.05 16 13 C -0.08 -1.30 5.67 -26.56 -0.15 -1.45 16 14 C -0.11 -1.68 1.97 -154.54 -0.31 -1.99 16 15 C -0.18 -2.42 9.93 -26.79 -0.27 -2.68 16 16 C -0.18 -2.32 9.99 -26.81 -0.27 -2.59 16 17 C -0.08 -1.26 5.67 -26.56 -0.15 -1.41 16 18 C -0.09 -1.86 5.19 -26.67 -0.14 -2.00 16 19 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 20 H 0.06 1.34 8.09 -51.93 -0.42 0.92 16 21 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 22 H 0.06 1.41 7.96 -51.93 -0.41 0.99 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 25 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 265.17 15.07 4.00 4.00 Total: -1.00 -31.62 265.17 -7.58 -39.20 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.02 Total: 0.85 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -2.26 Total: -20.19 kcal Atomic # 7 Polarization: -21.92 SS G_CDS: 0.65 Total: -21.27 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.08 Total: -17.36 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.62 -7.58 -39.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575512280.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.718 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds