Wall clock time and date at job start Mon Mar 30 2020 02:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30516 * 1 3 3 Si 1.86799 * 120.00179 * 2 1 4 4 H 1.48501 * 109.46962 * 274.98891 * 3 2 1 5 5 H 1.48498 * 109.46974 * 34.98195 * 3 2 1 6 6 H 1.48499 * 109.47630 * 154.98509 * 3 2 1 7 7 C 1.40462 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99686 * 186.25323 * 7 2 1 9 9 C 1.41025 * 119.99988 * 6.24524 * 7 2 1 10 10 O 1.21432 * 120.00230 * 353.73414 * 9 7 2 11 11 C 1.50704 * 119.99811 * 173.72354 * 9 7 2 12 12 H 1.09002 * 109.47445 * 34.99821 * 11 9 7 13 13 C 1.52943 * 109.47614 * 274.98285 * 11 9 7 14 14 C 1.52941 * 109.82149 * 177.02085 * 13 11 9 15 15 C 1.53180 * 109.45274 * 62.97773 * 14 13 11 16 16 C 1.53143 * 108.88860 * 303.43913 * 15 14 13 17 17 C 1.52811 * 117.75480 * 199.62366 * 16 15 14 18 18 C 1.52848 * 117.68034 * 268.50883 * 16 15 14 19 19 C 1.53156 * 115.00612 * 53.93128 * 16 15 14 20 20 H 0.96996 * 119.99860 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.41404 * 297.12815 * 13 11 9 22 22 H 1.08996 * 109.41525 * 56.91613 * 13 11 9 23 23 H 1.08996 * 109.47702 * 182.97358 * 14 13 11 24 24 H 1.09001 * 109.47514 * 302.98556 * 14 13 11 25 25 H 1.09004 * 109.57099 * 183.61437 * 15 14 13 26 26 H 1.09003 * 109.56687 * 63.25900 * 15 14 13 27 27 H 1.08999 * 117.50464 * 215.10557 * 17 16 15 28 28 H 1.08998 * 117.50022 * 0.15203 * 17 16 15 29 29 H 1.09003 * 117.50279 * 359.72062 * 18 16 15 30 30 H 1.08999 * 117.51013 * 144.73986 * 18 16 15 31 31 H 1.08996 * 109.56349 * 65.88323 * 19 16 15 32 32 H 1.09001 * 109.57065 * 186.11687 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3813 2.1072 -1.3948 5 1 1.4933 2.6199 0.8027 6 1 3.5855 1.4121 0.5920 7 6 2.0075 -1.2164 -0.0005 8 1 3.0827 -1.2192 0.1013 9 6 1.3086 -2.4341 -0.1339 10 8 0.0943 -2.4404 -0.1339 11 6 2.0688 -3.7274 -0.2768 12 1 2.9795 -3.6816 0.3205 13 6 2.4331 -3.9452 -1.7461 14 6 3.2688 -5.2180 -1.8901 15 6 2.4354 -6.4274 -1.4550 16 6 1.9480 -6.2033 -0.0206 17 6 1.5027 -7.4271 0.7790 18 6 2.8226 -6.7301 1.1169 19 6 1.1968 -4.8888 0.2101 20 1 -0.4850 0.8400 0.0004 21 1 1.5211 -4.0421 -2.3350 22 1 3.0074 -3.0921 -2.1073 23 1 3.5696 -5.3395 -2.9307 24 1 4.1562 -5.1432 -1.2616 25 1 3.0490 -7.3274 -1.4958 26 1 1.5779 -6.5377 -2.1189 27 1 0.6735 -7.2993 1.4749 28 1 1.5578 -8.3977 0.2861 29 1 3.7460 -7.2422 0.8462 30 1 2.8621 -6.1435 2.0347 31 1 0.2603 -4.9009 -0.3475 32 1 0.9871 -4.7697 1.2731 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575512491.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:22 Heat of formation + Delta-G solvation = -47.096523 kcal Electronic energy + Delta-G solvation = -13844.017349 eV Core-core repulsion = 11575.992371 eV Total energy + Delta-G solvation = -2268.024978 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.05700 -36.57331 -33.95293 -32.57224 -30.23803 -27.33624 -26.45624 -22.82088 -22.21304 -20.99359 -19.02793 -17.94845 -16.21323 -15.26768 -14.94868 -14.53474 -13.83085 -13.48100 -13.11071 -12.80425 -12.37651 -12.11757 -11.71100 -11.35050 -11.24513 -11.09433 -10.71972 -10.57349 -10.51027 -10.44232 -10.29075 -9.87864 -9.65786 -9.39903 -9.03206 -8.84743 -7.24610 -6.15564 -4.82074 3.07325 3.16468 3.20261 4.06671 4.11646 4.30233 4.97618 5.13042 5.21799 5.35409 5.52639 5.60993 5.75242 5.88271 5.96890 6.01742 6.14655 6.20118 6.26448 6.33543 6.41087 6.43918 6.55451 6.70947 6.82178 6.90565 7.03270 7.15203 7.28595 7.32814 8.16935 8.90038 8.99517 10.41847 10.66859 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.050829 B = 0.008374 C = 0.007962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.736775 B = 3343.047568 C = 3516.060998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.083 3.917 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.370 3.630 10 O -0.546 6.546 11 C -0.121 4.121 12 H 0.063 0.937 13 C -0.098 4.098 14 C -0.114 4.114 15 C -0.078 4.078 16 C -0.114 4.114 17 C -0.184 4.184 18 C -0.178 4.178 19 C -0.060 4.060 20 H 0.271 0.729 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.938 -8.540 -1.211 10.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.264 3.736 10 O -0.435 6.435 11 C -0.140 4.140 12 H 0.082 0.918 13 C -0.135 4.135 14 C -0.152 4.152 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.220 4.220 18 C -0.215 4.215 19 C -0.097 4.097 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.178 -8.497 -1.210 10.024 hybrid contribution 0.679 0.773 0.074 1.032 sum 5.858 -7.724 -1.137 9.760 Atomic orbital electron populations 1.69963 1.07488 1.27723 1.31955 1.26017 0.94526 1.00842 0.92545 0.86453 0.80626 0.81438 0.78930 1.19569 1.20283 1.18608 1.20841 0.95243 0.92230 1.48465 0.91435 1.19466 0.88804 0.87414 0.77914 1.90380 1.15716 1.88245 1.49149 1.21625 0.99373 0.97420 0.95630 0.91816 1.21282 0.99267 0.96279 0.96705 1.21543 0.98501 0.95248 0.99881 1.21113 0.99057 0.97443 0.93926 1.21651 1.02012 0.95266 0.92470 1.22953 0.98393 0.96513 1.04190 1.22965 0.94156 1.04106 1.00241 1.20936 0.97957 0.90238 1.00610 0.91782 0.92550 0.91878 0.92722 0.92302 0.92785 0.91834 0.89131 0.89501 0.89506 0.89062 0.91194 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.84 11.75 55.57 0.65 -21.19 16 2 C 0.08 2.30 5.50 -17.27 -0.09 2.20 16 3 Si 0.90 19.78 29.57 -169.99 -5.03 14.76 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.54 -15.07 9.21 -37.69 -0.35 -15.42 16 8 H 0.07 1.77 7.86 -52.48 -0.41 1.36 16 9 C 0.37 10.39 6.01 -33.25 -0.20 10.19 16 10 O -0.55 -17.39 14.58 5.43 0.08 -17.31 16 11 C -0.12 -2.70 2.40 -91.71 -0.22 -2.92 16 12 H 0.06 1.38 8.12 -51.93 -0.42 0.96 16 13 C -0.10 -1.91 5.08 -26.79 -0.14 -2.05 16 14 C -0.11 -1.78 5.93 -26.67 -0.16 -1.94 16 15 C -0.08 -1.16 5.67 -26.56 -0.15 -1.31 16 16 C -0.11 -1.86 1.97 -154.53 -0.31 -2.17 16 17 C -0.18 -2.59 9.99 -26.81 -0.27 -2.86 16 18 C -0.18 -2.57 9.93 -26.79 -0.27 -2.83 16 19 C -0.06 -1.23 4.55 -26.56 -0.12 -1.35 16 20 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 21 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 22 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.56 7.76 -51.93 -0.40 1.16 16 32 H 0.05 1.16 8.10 -51.93 -0.42 0.74 16 LS Contribution 264.96 15.07 3.99 3.99 Total: -1.00 -31.42 264.96 -7.58 -39.00 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.02 Total: 1.19 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -2.27 Total: -20.45 kcal Atomic # 7 Polarization: -21.84 SS G_CDS: 0.65 Total: -21.19 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.08 Total: -17.31 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.42 -7.58 -39.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575512491.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.095 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds