Wall clock time and date at job start Mon Mar 30 2020 02:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30516 * 1 3 3 Si 1.86799 * 120.00179 * 2 1 4 4 H 1.48501 * 109.46962 * 274.98891 * 3 2 1 5 5 H 1.48498 * 109.46974 * 34.98195 * 3 2 1 6 6 H 1.48499 * 109.47630 * 154.98509 * 3 2 1 7 7 C 1.40462 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99686 * 186.25323 * 7 2 1 9 9 C 1.41025 * 119.99988 * 6.24524 * 7 2 1 10 10 O 1.21432 * 120.00230 * 353.73414 * 9 7 2 11 11 C 1.50704 * 119.99811 * 173.72354 * 9 7 2 12 12 H 1.09002 * 109.47445 * 34.99821 * 11 9 7 13 13 C 1.52943 * 109.47614 * 274.98285 * 11 9 7 14 14 C 1.52941 * 109.82149 * 177.02085 * 13 11 9 15 15 C 1.53180 * 109.45274 * 62.97773 * 14 13 11 16 16 C 1.53143 * 108.88860 * 303.43913 * 15 14 13 17 17 C 1.52811 * 117.75480 * 199.62366 * 16 15 14 18 18 C 1.52848 * 117.68034 * 268.50883 * 16 15 14 19 19 C 1.53156 * 115.00612 * 53.93128 * 16 15 14 20 20 H 0.96996 * 119.99860 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.41404 * 297.12815 * 13 11 9 22 22 H 1.08996 * 109.41525 * 56.91613 * 13 11 9 23 23 H 1.08996 * 109.47702 * 182.97358 * 14 13 11 24 24 H 1.09001 * 109.47514 * 302.98556 * 14 13 11 25 25 H 1.09004 * 109.57099 * 183.61437 * 15 14 13 26 26 H 1.09003 * 109.56687 * 63.25900 * 15 14 13 27 27 H 1.08999 * 117.50464 * 215.10557 * 17 16 15 28 28 H 1.08998 * 117.50022 * 0.15203 * 17 16 15 29 29 H 1.09003 * 117.50279 * 359.72062 * 18 16 15 30 30 H 1.08999 * 117.51013 * 144.73986 * 18 16 15 31 31 H 1.08996 * 109.56349 * 65.88323 * 19 16 15 32 32 H 1.09001 * 109.57065 * 186.11687 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3813 2.1072 -1.3948 5 1 1.4933 2.6199 0.8027 6 1 3.5855 1.4121 0.5920 7 6 2.0075 -1.2164 -0.0005 8 1 3.0827 -1.2192 0.1013 9 6 1.3086 -2.4341 -0.1339 10 8 0.0943 -2.4404 -0.1339 11 6 2.0688 -3.7274 -0.2768 12 1 2.9795 -3.6816 0.3205 13 6 2.4331 -3.9452 -1.7461 14 6 3.2688 -5.2180 -1.8901 15 6 2.4354 -6.4274 -1.4550 16 6 1.9480 -6.2033 -0.0206 17 6 1.5027 -7.4271 0.7790 18 6 2.8226 -6.7301 1.1169 19 6 1.1968 -4.8888 0.2101 20 1 -0.4850 0.8400 0.0004 21 1 1.5211 -4.0421 -2.3350 22 1 3.0074 -3.0921 -2.1073 23 1 3.5696 -5.3395 -2.9307 24 1 4.1562 -5.1432 -1.2616 25 1 3.0490 -7.3274 -1.4958 26 1 1.5779 -6.5377 -2.1189 27 1 0.6735 -7.2993 1.4749 28 1 1.5578 -8.3977 0.2861 29 1 3.7460 -7.2422 0.8462 30 1 2.8621 -6.1435 2.0347 31 1 0.2603 -4.9009 -0.3475 32 1 0.9871 -4.7697 1.2731 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575512491.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:22 Heat of formation + Delta-G solvation = -65.460172 kcal Electronic energy + Delta-G solvation = -13844.813656 eV Core-core repulsion = 11575.992371 eV Total energy + Delta-G solvation = -2268.821286 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.54623 -38.52510 -35.46203 -34.71535 -31.84513 -29.24867 -28.09166 -24.56578 -23.35497 -22.44024 -20.86968 -19.42522 -18.33131 -17.17868 -16.23043 -16.06059 -15.46586 -15.03555 -14.81732 -14.56146 -13.99071 -13.63701 -13.42390 -13.17612 -12.79033 -12.52751 -12.42978 -12.28123 -12.04931 -11.94694 -11.82694 -11.61741 -11.22906 -10.98059 -10.74312 -10.35780 -9.41695 -8.26625 -7.08026 1.33091 1.35490 1.52630 2.19023 2.21578 2.92330 3.36592 3.74358 3.89512 3.98493 4.08645 4.30510 4.34738 4.47612 4.56484 4.69341 4.75451 4.80948 4.92981 5.02805 5.05621 5.12492 5.15784 5.20270 5.30882 5.34832 5.41500 5.42990 5.52257 5.62496 5.99018 6.73302 6.85778 8.30332 8.53755 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.050829 B = 0.008374 C = 0.007962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.736775 B = 3343.047568 C = 3516.060998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.025 3.975 3 Si 0.991 3.009 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.248 1.248 7 C -0.565 4.565 8 H 0.082 0.918 9 C 0.344 3.656 10 O -0.598 6.598 11 C -0.114 4.114 12 H 0.070 0.930 13 C -0.094 4.094 14 C -0.105 4.105 15 C -0.074 4.074 16 C -0.136 4.136 17 C -0.171 4.171 18 C -0.166 4.166 19 C -0.052 4.052 20 H 0.280 0.720 21 H 0.035 0.965 22 H 0.055 0.945 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.521 -9.356 -1.582 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.193 4.193 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.171 1.171 7 C -0.596 4.596 8 H 0.100 0.900 9 C 0.242 3.758 10 O -0.492 6.492 11 C -0.133 4.133 12 H 0.088 0.912 13 C -0.132 4.132 14 C -0.143 4.143 15 C -0.111 4.111 16 C -0.136 4.136 17 C -0.207 4.207 18 C -0.203 4.203 19 C -0.090 4.090 20 H 0.090 0.910 21 H 0.054 0.946 22 H 0.074 0.926 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.782 -9.335 -1.580 12.256 hybrid contribution -0.188 1.043 0.228 1.084 sum 7.593 -8.293 -1.352 11.325 Atomic orbital electron populations 1.70102 1.09910 1.29603 1.32577 1.27273 0.95440 1.05560 0.91067 0.85106 0.79212 0.75099 0.79590 1.18353 1.19244 1.17087 1.21364 0.96169 0.93288 1.48812 0.89961 1.20333 0.88594 0.90139 0.76725 1.90333 1.17849 1.89510 1.51482 1.21446 0.98806 0.95149 0.97929 0.91152 1.21249 0.99123 0.98775 0.94048 1.21496 0.97939 0.92927 1.01897 1.21128 0.99268 0.98344 0.92344 1.21518 1.03727 0.93837 0.94526 1.23046 0.98108 0.96558 1.03032 1.23049 0.95293 1.03335 0.98609 1.20748 0.97029 0.92681 0.98551 0.90963 0.94564 0.92634 0.90085 0.91198 0.89265 0.92322 0.89889 0.86719 0.86737 0.90034 0.94385 0.94761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.28 11.75 21.91 0.26 -48.03 16 2 C 0.03 1.41 5.50 85.43 0.47 1.88 16 3 Si 0.99 40.57 29.57 68.60 2.03 42.60 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 7 C -0.57 -32.60 9.21 23.50 0.22 -32.38 16 8 H 0.08 4.33 7.86 -2.91 -0.02 4.31 16 9 C 0.34 20.28 6.01 26.37 0.16 20.44 16 10 O -0.60 -40.58 14.58 -3.50 -0.05 -40.63 16 11 C -0.11 -5.22 2.40 -11.50 -0.03 -5.25 16 12 H 0.07 3.08 8.12 -2.39 -0.02 3.06 16 13 C -0.09 -3.70 5.08 30.56 0.16 -3.55 16 14 C -0.11 -2.99 5.93 30.63 0.18 -2.81 16 15 C -0.07 -1.96 5.67 30.70 0.17 -1.79 16 16 C -0.14 -4.23 1.97 -52.20 -0.10 -4.34 16 17 C -0.17 -4.39 9.99 30.54 0.31 -4.09 16 18 C -0.17 -4.32 9.93 30.56 0.30 -4.01 16 19 C -0.05 -2.23 4.55 30.70 0.14 -2.09 16 20 H 0.28 15.24 8.29 -92.71 -0.77 14.47 16 21 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 23 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.09 1.82 8.09 -2.38 -0.02 1.80 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.11 2.38 8.14 -2.39 -0.02 2.37 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.04 1.81 7.76 -2.39 -0.02 1.79 16 32 H 0.03 1.53 8.10 -2.39 -0.02 1.51 16 Total: -1.00 -72.06 264.96 5.29 -66.77 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 1.08 Total: 17.28 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 1.97 Total: -38.00 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.26 Total: -48.03 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.05 Total: -40.63 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -72.06 5.29 -66.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575512491.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.311 kcal (2) G-P(sol) polarization free energy of solvation -72.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds