Wall clock time and date at job start Mon Mar 30 2020 02:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30515 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48503 * 109.46971 * 240.27303 * 3 2 1 5 5 H 1.48505 * 109.47080 * 0.27101 * 3 2 1 6 6 H 1.48492 * 109.47470 * 120.27233 * 3 2 1 7 7 C 1.40465 * 120.00464 * 180.26922 * 2 1 3 8 8 H 1.07999 * 120.00167 * 179.72827 * 7 2 1 9 9 C 1.41023 * 119.99492 * 359.72727 * 7 2 1 10 10 O 1.21431 * 120.00166 * 359.97438 * 9 7 2 11 11 C 1.50706 * 119.99843 * 179.97438 * 9 7 2 12 12 H 1.09003 * 109.47419 * 330.00296 * 11 9 7 13 13 C 1.52949 * 109.47387 * 90.00734 * 11 9 7 14 14 C 1.52949 * 109.82093 * 182.98139 * 13 11 9 15 15 C 1.53187 * 109.44895 * 297.02152 * 14 13 11 16 16 C 1.53150 * 108.88189 * 56.56536 * 15 14 13 17 17 C 1.52848 * 117.66997 * 91.48738 * 16 15 14 18 18 C 1.52803 * 117.74842 * 160.36213 * 16 15 14 19 19 C 1.53144 * 115.01115 * 306.05913 * 16 15 14 20 20 H 0.97000 * 120.00524 * 359.73197 * 1 2 3 21 21 H 1.09001 * 109.41609 * 303.09279 * 13 11 9 22 22 H 1.08998 * 109.41373 * 62.87923 * 13 11 9 23 23 H 1.08994 * 109.47321 * 177.02713 * 14 13 11 24 24 H 1.09001 * 109.47404 * 57.01099 * 14 13 11 25 25 H 1.09009 * 109.56337 * 296.74952 * 15 14 13 26 26 H 1.08993 * 109.66839 * 176.45206 * 15 14 13 27 27 H 1.09001 * 117.50261 * 215.22399 * 17 16 15 28 28 H 1.09000 * 117.50715 * 0.27295 * 17 16 15 29 29 H 1.08997 * 117.50720 * 359.85811 * 18 16 15 30 30 H 1.09006 * 117.50324 * 144.87322 * 18 16 15 31 31 H 1.09010 * 109.57043 * 294.12096 * 19 16 15 32 32 H 1.08994 * 109.67172 * 173.82565 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.0879 1.6993 -1.2159 5 1 1.2741 2.7465 0.0066 6 1 3.0978 1.6937 1.2091 7 6 2.0076 -1.2164 -0.0057 8 1 3.0876 -1.2163 -0.0102 9 6 1.3025 -2.4377 -0.0056 10 8 0.0882 -2.4377 -0.0002 11 6 2.0560 -3.7428 -0.0124 12 1 3.0062 -3.6112 -0.5301 13 6 2.3173 -4.1881 1.4273 14 6 3.1460 -5.4737 1.4303 15 6 2.3500 -6.5952 0.7557 16 6 1.9636 -6.1481 -0.6572 17 6 2.9181 -6.4984 -1.7985 18 6 1.5807 -7.2300 -1.6660 19 6 1.2250 -4.8087 -0.7332 20 1 -0.4851 0.8400 0.0039 21 1 2.8613 -3.4052 1.9557 22 1 1.3666 -4.3689 1.9289 23 1 3.3736 -5.7569 2.4578 24 1 4.0749 -5.3084 0.8845 25 1 1.4484 -6.8010 1.3329 26 1 2.9609 -7.4961 0.6994 27 1 3.0192 -5.7771 -2.6094 28 1 3.8222 -7.0525 -1.5464 29 1 1.6049 -8.2657 -1.3271 30 1 0.8016 -6.9904 -2.3898 31 1 0.2517 -4.9005 -0.2511 32 1 1.0901 -4.5227 -1.7763 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575512493.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:24 Heat of formation + Delta-G solvation = -47.110622 kcal Electronic energy + Delta-G solvation = -13840.513024 eV Core-core repulsion = 11572.487434 eV Total energy + Delta-G solvation = -2268.025590 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.05710 -36.57171 -33.95079 -32.56072 -30.24585 -27.30738 -26.49003 -22.82151 -22.21319 -21.00176 -19.02061 -17.94688 -16.21218 -15.26575 -14.94894 -14.54301 -13.83715 -13.48378 -13.11498 -12.76928 -12.37262 -12.11339 -11.72871 -11.34589 -11.24220 -11.09381 -10.70742 -10.57909 -10.49388 -10.44330 -10.32705 -9.90316 -9.64953 -9.39632 -9.03330 -8.84484 -7.24612 -6.14173 -4.82663 3.09788 3.15884 3.18206 4.06649 4.11626 4.30205 4.97435 5.12821 5.21748 5.36363 5.52706 5.60728 5.75816 5.88238 5.96012 6.01180 6.14621 6.20670 6.26225 6.33574 6.41022 6.44050 6.54891 6.71085 6.82215 6.89660 7.03345 7.14947 7.27646 7.32888 8.16000 8.89863 8.99635 10.42413 10.67506 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.049656 B = 0.008323 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.739014 B = 3363.516398 C = 3485.668575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.083 3.917 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.370 3.630 10 O -0.546 6.546 11 C -0.121 4.121 12 H 0.063 0.937 13 C -0.098 4.098 14 C -0.114 4.114 15 C -0.078 4.078 16 C -0.114 4.114 17 C -0.178 4.178 18 C -0.184 4.184 19 C -0.060 4.060 20 H 0.272 0.728 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.863 -8.634 -0.037 10.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.085 0.915 9 C 0.264 3.736 10 O -0.435 6.435 11 C -0.141 4.141 12 H 0.082 0.918 13 C -0.136 4.136 14 C -0.152 4.152 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.215 4.215 18 C -0.221 4.221 19 C -0.098 4.098 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.099 -8.586 -0.037 9.986 hybrid contribution 0.703 0.785 -0.095 1.058 sum 5.802 -7.802 -0.132 9.724 Atomic orbital electron populations 1.69945 1.07461 1.27840 1.31895 1.26018 0.94548 1.00816 0.92570 0.86520 0.80147 0.80966 0.79759 1.19048 1.20397 1.19027 1.20822 0.94760 0.92075 1.49085 0.91511 1.19448 0.88830 0.87490 0.77832 1.90380 1.15688 1.88808 1.48612 1.21630 0.99676 0.97632 0.95112 0.91835 1.21287 0.99475 0.95784 0.97032 1.21541 0.98752 0.95653 0.99206 1.21111 0.99535 0.97177 0.93705 1.21638 1.02014 0.96678 0.91034 1.22964 0.93392 1.03528 1.01570 1.22952 0.98828 0.96874 1.03402 1.20937 0.98335 0.90298 1.00209 0.91708 0.92010 0.92477 0.92725 0.92302 0.91839 0.92777 0.89051 0.89497 0.89499 0.89134 0.91155 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.87 11.72 55.57 0.65 -21.21 16 2 C 0.08 2.30 5.50 -17.27 -0.10 2.20 16 3 Si 0.90 19.81 29.56 -169.99 -5.03 14.78 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.54 -15.08 9.19 -37.69 -0.35 -15.43 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.37 10.40 5.96 -33.25 -0.20 10.20 16 10 O -0.55 -17.40 14.63 5.43 0.08 -17.32 16 11 C -0.12 -2.70 2.42 -91.71 -0.22 -2.92 16 12 H 0.06 1.38 8.09 -51.93 -0.42 0.96 16 13 C -0.10 -1.93 5.09 -26.78 -0.14 -2.06 16 14 C -0.11 -1.78 5.93 -26.66 -0.16 -1.94 16 15 C -0.08 -1.16 5.67 -26.56 -0.15 -1.31 16 16 C -0.11 -1.86 1.97 -154.54 -0.31 -2.16 16 17 C -0.18 -2.56 9.93 -26.80 -0.27 -2.83 16 18 C -0.18 -2.59 9.99 -26.82 -0.27 -2.86 16 19 C -0.06 -1.24 4.61 -26.57 -0.12 -1.36 16 20 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 21 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 22 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 26 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 27 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.57 7.75 -51.92 -0.40 1.17 16 32 H 0.05 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 264.96 15.07 3.99 3.99 Total: -1.00 -31.41 264.96 -7.58 -38.99 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.01 Total: 1.23 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -2.27 Total: -20.47 kcal Atomic # 7 Polarization: -21.87 SS G_CDS: 0.65 Total: -21.21 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.08 Total: -17.32 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.41 -7.58 -38.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575512493.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.116 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds