Wall clock time and date at job start Mon Mar 30 2020 02:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30515 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48503 * 109.46971 * 240.27303 * 3 2 1 5 5 H 1.48505 * 109.47080 * 0.27101 * 3 2 1 6 6 H 1.48492 * 109.47470 * 120.27233 * 3 2 1 7 7 C 1.40465 * 120.00464 * 180.26922 * 2 1 3 8 8 H 1.07999 * 120.00167 * 179.72827 * 7 2 1 9 9 C 1.41023 * 119.99492 * 359.72727 * 7 2 1 10 10 O 1.21431 * 120.00166 * 359.97438 * 9 7 2 11 11 C 1.50706 * 119.99843 * 179.97438 * 9 7 2 12 12 H 1.09003 * 109.47419 * 330.00296 * 11 9 7 13 13 C 1.52949 * 109.47387 * 90.00734 * 11 9 7 14 14 C 1.52949 * 109.82093 * 182.98139 * 13 11 9 15 15 C 1.53187 * 109.44895 * 297.02152 * 14 13 11 16 16 C 1.53150 * 108.88189 * 56.56536 * 15 14 13 17 17 C 1.52848 * 117.66997 * 91.48738 * 16 15 14 18 18 C 1.52803 * 117.74842 * 160.36213 * 16 15 14 19 19 C 1.53144 * 115.01115 * 306.05913 * 16 15 14 20 20 H 0.97000 * 120.00524 * 359.73197 * 1 2 3 21 21 H 1.09001 * 109.41609 * 303.09279 * 13 11 9 22 22 H 1.08998 * 109.41373 * 62.87923 * 13 11 9 23 23 H 1.08994 * 109.47321 * 177.02713 * 14 13 11 24 24 H 1.09001 * 109.47404 * 57.01099 * 14 13 11 25 25 H 1.09009 * 109.56337 * 296.74952 * 15 14 13 26 26 H 1.08993 * 109.66839 * 176.45206 * 15 14 13 27 27 H 1.09001 * 117.50261 * 215.22399 * 17 16 15 28 28 H 1.09000 * 117.50715 * 0.27295 * 17 16 15 29 29 H 1.08997 * 117.50720 * 359.85811 * 18 16 15 30 30 H 1.09006 * 117.50324 * 144.87322 * 18 16 15 31 31 H 1.09010 * 109.57043 * 294.12096 * 19 16 15 32 32 H 1.08994 * 109.67172 * 173.82565 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.0879 1.6993 -1.2159 5 1 1.2741 2.7465 0.0066 6 1 3.0978 1.6937 1.2091 7 6 2.0076 -1.2164 -0.0057 8 1 3.0876 -1.2163 -0.0102 9 6 1.3025 -2.4377 -0.0056 10 8 0.0882 -2.4377 -0.0002 11 6 2.0560 -3.7428 -0.0124 12 1 3.0062 -3.6112 -0.5301 13 6 2.3173 -4.1881 1.4273 14 6 3.1460 -5.4737 1.4303 15 6 2.3500 -6.5952 0.7557 16 6 1.9636 -6.1481 -0.6572 17 6 2.9181 -6.4984 -1.7985 18 6 1.5807 -7.2300 -1.6660 19 6 1.2250 -4.8087 -0.7332 20 1 -0.4851 0.8400 0.0039 21 1 2.8613 -3.4052 1.9557 22 1 1.3666 -4.3689 1.9289 23 1 3.3736 -5.7569 2.4578 24 1 4.0749 -5.3084 0.8845 25 1 1.4484 -6.8010 1.3329 26 1 2.9609 -7.4961 0.6994 27 1 3.0192 -5.7771 -2.6094 28 1 3.8222 -7.0525 -1.5464 29 1 1.6049 -8.2657 -1.3271 30 1 0.8016 -6.9904 -2.3898 31 1 0.2517 -4.9005 -0.2511 32 1 1.0901 -4.5227 -1.7763 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575512493.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:24 Heat of formation + Delta-G solvation = -65.476654 kcal Electronic energy + Delta-G solvation = -13841.309435 eV Core-core repulsion = 11572.487434 eV Total energy + Delta-G solvation = -2268.822000 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.54645 -38.52465 -35.46408 -34.70289 -31.85633 -29.22498 -28.12235 -24.56618 -23.35440 -22.45260 -20.85920 -19.42749 -18.32989 -17.18277 -16.22882 -16.06479 -15.47564 -15.03515 -14.81795 -14.53384 -13.97893 -13.65431 -13.42791 -13.18184 -12.76531 -12.54618 -12.41037 -12.27434 -12.09312 -11.95809 -11.82809 -11.62511 -11.23149 -10.97365 -10.74317 -10.36002 -9.41801 -8.25409 -7.08918 1.35191 1.35339 1.50324 2.20077 2.20422 2.92284 3.37733 3.74661 3.89819 3.97695 4.08193 4.30147 4.34197 4.47282 4.56205 4.69245 4.75293 4.81083 4.92852 5.02562 5.05748 5.11973 5.15415 5.19543 5.30727 5.34658 5.40792 5.42494 5.51822 5.61931 5.98166 6.72892 6.85754 8.30628 8.54062 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.049656 B = 0.008323 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.739014 B = 3363.516398 C = 3485.668575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.025 3.975 3 Si 0.991 3.009 4 H -0.253 1.253 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.566 4.566 8 H 0.082 0.918 9 C 0.344 3.656 10 O -0.598 6.598 11 C -0.114 4.114 12 H 0.070 0.930 13 C -0.095 4.095 14 C -0.105 4.105 15 C -0.074 4.074 16 C -0.136 4.136 17 C -0.166 4.166 18 C -0.171 4.171 19 C -0.053 4.053 20 H 0.280 0.720 21 H 0.053 0.947 22 H 0.036 0.964 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.428 -9.502 0.100 12.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.194 4.194 3 Si 0.810 3.190 4 H -0.177 1.177 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.597 4.597 8 H 0.101 0.899 9 C 0.242 3.758 10 O -0.492 6.492 11 C -0.133 4.133 12 H 0.088 0.912 13 C -0.132 4.132 14 C -0.142 4.142 15 C -0.111 4.111 16 C -0.136 4.136 17 C -0.203 4.203 18 C -0.207 4.207 19 C -0.090 4.090 20 H 0.090 0.910 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.685 -9.476 0.099 12.201 hybrid contribution -0.155 1.073 -0.165 1.096 sum 7.530 -8.403 -0.066 11.283 Atomic orbital electron populations 1.70092 1.09884 1.29666 1.32529 1.27274 0.95464 1.05552 0.91082 0.85173 0.78591 0.74697 0.80578 1.17701 1.19338 1.17551 1.21366 0.95769 0.93144 1.49423 0.89940 1.20315 0.88610 0.90275 0.76582 1.90333 1.17812 1.90050 1.50958 1.21450 0.99054 0.95365 0.97465 0.91161 1.21254 0.99300 0.98175 0.94518 1.21493 0.98195 0.93291 1.01251 1.21126 0.99810 0.98003 0.92135 1.21505 1.03808 0.95102 0.93175 1.23049 0.94399 1.03117 0.99698 1.23045 0.98514 0.97497 1.01682 1.20752 0.97284 0.92866 0.98147 0.90954 0.92816 0.94533 0.90106 0.91181 0.92345 0.89243 0.90008 0.86733 0.86724 0.89869 0.94347 0.94710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.34 11.72 21.91 0.26 -48.08 16 2 C 0.02 1.39 5.50 85.43 0.47 1.86 16 3 Si 0.99 40.60 29.56 68.60 2.03 42.62 16 4 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 7 C -0.57 -32.69 9.19 23.50 0.22 -32.48 16 8 H 0.08 4.33 7.85 -2.91 -0.02 4.31 16 9 C 0.34 20.30 5.96 26.37 0.16 20.46 16 10 O -0.60 -40.58 14.63 -3.50 -0.05 -40.63 16 11 C -0.11 -5.23 2.42 -11.50 -0.03 -5.26 16 12 H 0.07 3.08 8.09 -2.39 -0.02 3.06 16 13 C -0.09 -3.74 5.09 30.56 0.16 -3.59 16 14 C -0.10 -2.99 5.93 30.64 0.18 -2.81 16 15 C -0.07 -1.96 5.67 30.71 0.17 -1.79 16 16 C -0.14 -4.22 1.97 -52.20 -0.10 -4.33 16 17 C -0.17 -4.30 9.93 30.55 0.30 -4.00 16 18 C -0.17 -4.38 9.99 30.54 0.31 -4.07 16 19 C -0.05 -2.25 4.61 30.70 0.14 -2.11 16 20 H 0.28 15.32 8.29 -92.71 -0.77 14.55 16 21 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 22 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 23 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.09 1.83 8.09 -2.39 -0.02 1.81 16 27 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.04 1.83 7.75 -2.38 -0.02 1.81 16 32 H 0.03 1.55 8.10 -2.39 -0.02 1.53 16 Total: -1.00 -72.08 264.96 5.29 -66.80 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 1.08 Total: 17.40 kcal Atomic # 6 Polarization: -40.08 SS G_CDS: 1.97 Total: -38.10 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.26 Total: -48.08 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.05 Total: -40.63 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.62 kcal Total: -72.08 5.29 -66.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575512493.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.319 kcal (2) G-P(sol) polarization free energy of solvation -72.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds