Wall clock time and date at job start Mon Mar 30 2020 02:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47137 * 2 1 4 4 C 1.38509 * 119.89053 * 90.00090 * 3 2 1 5 5 C 1.50701 * 119.72890 * 359.97438 * 4 3 2 6 6 C 1.38694 * 120.54421 * 180.02562 * 4 3 2 7 7 C 1.37581 * 120.31768 * 0.02562 * 6 4 3 8 8 C 1.40698 * 119.77130 * 0.25122 * 7 6 4 9 9 C 1.41297 * 120.26032 * 179.72091 * 8 7 6 10 10 H 1.08000 * 120.00188 * 204.52071 * 9 8 7 11 11 C 1.39940 * 120.00120 * 24.52821 * 9 8 7 12 12 N 1.30844 * 119.99604 * 17.77070 * 11 9 8 13 13 Si 1.86800 * 120.00180 * 197.76463 * 11 9 8 14 14 H 1.48506 * 109.46738 * 60.00320 * 13 11 9 15 15 H 1.48493 * 109.47093 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47303 * 300.00344 * 13 11 9 17 17 C 1.37935 * 119.89242 * 269.98031 * 3 2 1 18 18 F 1.35100 * 120.16486 * 359.97438 * 17 3 2 19 19 H 1.09003 * 109.46617 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46998 * 299.99702 * 1 2 3 21 21 H 1.08997 * 109.47037 * 60.00077 * 1 2 3 22 22 H 1.09009 * 109.47395 * 240.00201 * 2 1 3 23 23 H 1.09000 * 109.47499 * 120.00137 * 2 1 3 24 24 H 1.09003 * 109.47564 * 270.02214 * 5 4 3 25 25 H 1.08994 * 109.47029 * 30.02511 * 5 4 3 26 26 H 1.09004 * 109.46909 * 150.02548 * 5 4 3 27 27 H 1.08004 * 119.84371 * 180.02562 * 6 4 3 28 28 H 1.08002 * 120.11129 * 179.97438 * 7 6 4 29 29 H 0.97010 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0716 1.2008 5 6 2.0078 1.3532 2.5009 6 6 2.7242 3.3793 1.2167 7 6 2.9592 4.0472 0.0370 8 6 2.7244 3.4009 -1.1905 9 6 2.9566 4.0790 -2.4081 10 1 2.4333 3.7764 -3.3031 11 6 3.8648 5.1426 -2.4545 12 7 4.7441 5.2942 -1.4975 13 14 3.8218 6.3459 -3.8827 14 1 2.4928 7.0066 -3.9334 15 1 4.8778 7.3732 -3.6963 16 1 4.0602 5.6150 -5.1532 17 6 2.2618 2.0688 -1.1958 18 9 2.0379 1.4327 -2.3665 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 0.9776 1.5226 2.8140 25 1 2.1751 0.2849 2.3645 26 1 2.6867 1.7327 3.2647 27 1 2.9002 3.8758 2.1595 28 1 3.3184 5.0656 0.0532 29 1 5.3740 6.0313 -1.5299 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575701582.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:47 Heat of formation + Delta-G solvation = -53.296983 kcal Electronic energy + Delta-G solvation = -13469.916956 eV Core-core repulsion = 11078.162800 eV Total energy + Delta-G solvation = -2391.754155 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.19691 -37.86698 -34.58160 -32.58622 -30.82854 -28.10757 -27.51544 -23.97320 -22.86018 -20.36237 -19.77565 -17.02666 -15.68609 -15.57076 -14.69779 -14.33401 -13.94422 -13.24600 -13.08968 -12.65382 -12.58390 -12.21086 -11.78506 -11.62889 -11.52469 -11.33135 -10.94394 -10.73263 -10.65862 -10.32973 -10.09384 -9.74151 -9.36955 -9.16909 -7.35420 -7.23722 -6.81483 -4.38872 2.66791 2.79228 3.04347 3.07615 3.15529 3.89786 4.49688 5.43263 5.54501 5.62473 5.85051 5.96423 6.03420 6.19205 6.26166 6.36411 6.41612 6.44234 6.51833 6.64845 6.76945 6.96881 7.14762 7.27174 7.54544 7.64702 7.97185 8.03503 8.11395 8.54080 8.73627 8.85917 10.11238 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.043740 B = 0.010407 C = 0.008780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.995358 B = 2689.766447 C = 3188.331401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 C -0.086 4.086 4 C -0.190 4.190 5 C -0.088 4.088 6 C -0.106 4.106 7 C -0.148 4.148 8 C 0.085 3.915 9 C -0.456 4.456 10 H 0.081 0.919 11 C 0.077 3.923 12 N -0.791 5.791 13 Si 0.912 3.088 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.264 1.264 17 C -0.024 4.024 18 F -0.163 7.163 19 H 0.046 0.954 20 H 0.052 0.948 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.125 0.875 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 -2.927 2.913 5.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 C -0.087 4.087 4 C -0.191 4.191 5 C -0.145 4.145 6 C -0.125 4.125 7 C -0.168 4.168 8 C 0.082 3.918 9 C -0.485 4.485 10 H 0.099 0.901 11 C -0.142 4.142 12 N -0.416 5.416 13 Si 0.736 3.264 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.189 1.189 17 C -0.045 4.045 18 F -0.142 7.142 19 H 0.065 0.935 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.142 0.858 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.027 -2.803 2.935 5.063 hybrid contribution 0.138 0.555 -0.835 1.012 sum -2.889 -2.248 2.100 4.220 Atomic orbital electron populations 1.21659 0.95729 1.00292 1.01968 1.20386 0.95519 0.94293 1.01547 1.19098 1.02460 0.95150 0.92016 1.18818 1.11860 0.95768 0.92690 1.20492 0.99824 0.99102 0.95051 1.20589 1.00695 0.94100 0.97091 1.21155 1.04791 1.00312 0.90519 1.17601 0.90774 0.88867 0.94528 1.19477 1.20685 1.12348 0.95989 0.90072 1.25905 0.93390 0.97459 0.97416 1.69819 1.12301 1.27502 1.31938 0.86292 0.79011 0.79662 0.81385 1.18697 1.20223 1.18861 1.17639 1.15198 0.92044 0.79577 1.91244 1.93659 1.81939 1.47336 0.93517 0.92854 0.92827 0.92123 0.91600 0.93580 0.92975 0.93450 0.88881 0.85760 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.89 37.16 0.37 -1.92 15 2 C -0.08 -1.50 5.46 -27.88 -0.15 -1.65 15 3 C -0.09 -1.97 5.13 -104.63 -0.54 -2.51 15 4 C -0.19 -4.15 5.90 -104.35 -0.62 -4.77 15 5 C -0.09 -1.52 9.59 36.01 0.35 -1.18 15 6 C -0.11 -2.45 9.66 -39.65 -0.38 -2.84 15 7 C -0.15 -3.84 8.69 -38.89 -0.34 -4.18 15 8 C 0.09 2.34 5.58 -106.76 -0.60 1.74 15 9 C -0.46 -12.46 8.78 -37.78 -0.33 -12.80 15 10 H 0.08 2.19 7.74 -52.49 -0.41 1.79 15 11 C 0.08 1.94 5.14 -17.34 -0.09 1.85 15 12 N -0.79 -20.36 10.96 55.55 0.61 -19.75 15 13 Si 0.91 18.82 29.60 -169.99 -5.03 13.79 15 14 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 15 H -0.28 -5.50 7.11 56.52 0.40 -5.10 15 16 H -0.26 -5.42 7.11 56.52 0.40 -5.02 15 17 C -0.02 -0.63 7.24 -38.64 -0.28 -0.91 15 18 F -0.16 -4.19 15.92 2.25 0.04 -4.15 15 19 H 0.05 0.64 8.14 -51.93 -0.42 0.21 15 20 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 21 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.06 1.15 7.63 -51.92 -0.40 0.75 15 23 H 0.07 1.10 5.92 -51.93 -0.31 0.80 15 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.05 0.83 5.91 -51.93 -0.31 0.52 15 26 H 0.05 0.75 8.08 -51.93 -0.42 0.33 15 27 H 0.09 1.90 8.06 -52.48 -0.42 1.48 15 28 H 0.12 3.27 6.16 -52.49 -0.32 2.95 15 29 H 0.28 6.59 8.30 -40.82 -0.34 6.25 15 LS Contribution 249.24 15.07 3.76 3.76 Total: -1.00 -27.60 249.24 -6.65 -34.25 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -3.41 Total: 1.26 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -2.61 Total: -29.15 kcal Atomic # 7 Polarization: -20.36 SS G_CDS: 0.61 Total: -19.75 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.04 Total: -4.15 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.60 -6.65 -34.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575701582.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.050 kcal (2) G-P(sol) polarization free energy of solvation -27.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds