Wall clock time and date at job start Mon Mar 30 2020 02:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47137 * 2 1 4 4 C 1.38509 * 119.89053 * 90.00090 * 3 2 1 5 5 C 1.50701 * 119.72890 * 359.97438 * 4 3 2 6 6 C 1.38694 * 120.54421 * 180.02562 * 4 3 2 7 7 C 1.37581 * 120.31768 * 0.02562 * 6 4 3 8 8 C 1.40698 * 119.77130 * 0.25122 * 7 6 4 9 9 C 1.41297 * 120.26032 * 179.72091 * 8 7 6 10 10 H 1.08000 * 120.00188 * 204.52071 * 9 8 7 11 11 C 1.39940 * 120.00120 * 24.52821 * 9 8 7 12 12 N 1.30844 * 119.99604 * 17.77070 * 11 9 8 13 13 Si 1.86800 * 120.00180 * 197.76463 * 11 9 8 14 14 H 1.48506 * 109.46738 * 60.00320 * 13 11 9 15 15 H 1.48493 * 109.47093 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47303 * 300.00344 * 13 11 9 17 17 C 1.37935 * 119.89242 * 269.98031 * 3 2 1 18 18 F 1.35100 * 120.16486 * 359.97438 * 17 3 2 19 19 H 1.09003 * 109.46617 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46998 * 299.99702 * 1 2 3 21 21 H 1.08997 * 109.47037 * 60.00077 * 1 2 3 22 22 H 1.09009 * 109.47395 * 240.00201 * 2 1 3 23 23 H 1.09000 * 109.47499 * 120.00137 * 2 1 3 24 24 H 1.09003 * 109.47564 * 270.02214 * 5 4 3 25 25 H 1.08994 * 109.47029 * 30.02511 * 5 4 3 26 26 H 1.09004 * 109.46909 * 150.02548 * 5 4 3 27 27 H 1.08004 * 119.84371 * 180.02562 * 6 4 3 28 28 H 1.08002 * 120.11129 * 179.97438 * 7 6 4 29 29 H 0.97010 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0716 1.2008 5 6 2.0078 1.3532 2.5009 6 6 2.7242 3.3793 1.2167 7 6 2.9592 4.0472 0.0370 8 6 2.7244 3.4009 -1.1905 9 6 2.9566 4.0790 -2.4081 10 1 2.4333 3.7764 -3.3031 11 6 3.8648 5.1426 -2.4545 12 7 4.7441 5.2942 -1.4975 13 14 3.8218 6.3459 -3.8827 14 1 2.4928 7.0066 -3.9334 15 1 4.8778 7.3732 -3.6963 16 1 4.0602 5.6150 -5.1532 17 6 2.2618 2.0688 -1.1958 18 9 2.0379 1.4327 -2.3665 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 0.9776 1.5226 2.8140 25 1 2.1751 0.2849 2.3645 26 1 2.6867 1.7327 3.2647 27 1 2.9002 3.8758 2.1595 28 1 3.3184 5.0656 0.0532 29 1 5.3740 6.0313 -1.5299 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575701582.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:46 Heat of formation + Delta-G solvation = -67.239877 kcal Electronic energy + Delta-G solvation = -13470.521565 eV Core-core repulsion = 11078.162800 eV Total energy + Delta-G solvation = -2392.358765 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.19585 -39.67314 -36.39384 -34.28077 -32.56342 -29.82727 -29.27108 -25.75318 -24.44747 -22.19753 -21.56446 -18.93871 -17.55522 -17.44312 -16.49965 -16.13913 -15.76105 -14.83216 -14.71911 -14.33385 -14.18472 -13.91030 -13.41633 -13.31942 -13.13347 -12.91062 -12.56224 -12.45476 -12.26207 -11.89169 -11.79709 -11.52910 -11.13551 -11.02537 -9.24139 -9.12344 -8.70040 -6.39805 0.81946 0.90243 1.34392 1.45710 1.49278 2.17353 2.61533 3.49883 3.98355 4.07168 4.22077 4.46662 4.56395 4.68699 4.74558 4.82853 4.98186 5.04581 5.06562 5.10080 5.20676 5.29065 5.39199 5.47989 5.65187 5.81818 6.03019 6.15791 6.22247 6.58485 6.77268 6.91691 8.25283 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.043740 B = 0.010407 C = 0.008780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.995358 B = 2689.766447 C = 3188.331401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.080 4.080 3 C -0.090 4.090 4 C -0.183 4.183 5 C -0.086 4.086 6 C -0.109 4.109 7 C -0.171 4.171 8 C 0.051 3.949 9 C -0.501 4.501 10 H 0.066 0.934 11 C 0.039 3.961 12 N -0.819 5.819 13 Si 0.985 3.015 14 H -0.259 1.259 15 H -0.259 1.259 16 H -0.263 1.263 17 C -0.060 4.060 18 F -0.171 7.171 19 H 0.080 0.920 20 H 0.061 0.939 21 H 0.031 0.969 22 H 0.052 0.948 23 H 0.094 0.906 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.699 -3.602 4.383 6.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.117 4.117 3 C -0.090 4.090 4 C -0.184 4.184 5 C -0.142 4.142 6 C -0.127 4.127 7 C -0.190 4.190 8 C 0.048 3.952 9 C -0.530 4.530 10 H 0.085 0.915 11 C -0.177 4.177 12 N -0.445 5.445 13 Si 0.805 3.195 14 H -0.184 1.184 15 H -0.183 1.183 16 H -0.188 1.188 17 C -0.080 4.080 18 F -0.150 7.150 19 H 0.099 0.901 20 H 0.080 0.920 21 H 0.050 0.950 22 H 0.070 0.930 23 H 0.113 0.887 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.139 0.861 28 H 0.129 0.871 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.498 -3.493 4.424 6.634 hybrid contribution 0.262 0.662 -1.164 1.364 sum -3.236 -2.831 3.260 5.395 Atomic orbital electron populations 1.21623 0.93799 1.02344 1.01341 1.20493 0.97103 0.91537 1.02530 1.19625 1.01101 0.97197 0.91116 1.19443 1.09044 0.95324 0.94604 1.20565 1.01542 0.99619 0.92475 1.20965 0.99690 0.94886 0.97196 1.21151 1.06342 1.00195 0.91330 1.17981 0.91931 0.89940 0.95300 1.19632 1.22669 1.14875 0.95861 0.91533 1.26723 0.92232 0.98394 1.00329 1.69846 1.12704 1.28300 1.33617 0.85217 0.79455 0.77288 0.77552 1.18361 1.18314 1.18757 1.18061 1.16952 0.92347 0.80609 1.91202 1.93870 1.81933 1.48006 0.90143 0.91996 0.94957 0.92972 0.88750 0.91482 0.91109 0.91752 0.86059 0.87112 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.89 71.98 0.71 -3.31 15 2 C -0.08 -2.78 5.46 29.85 0.16 -2.62 15 3 C -0.09 -4.00 5.13 -19.87 -0.10 -4.10 15 4 C -0.18 -7.58 5.90 -19.69 -0.12 -7.70 15 5 C -0.09 -2.56 9.59 71.24 0.68 -1.88 15 6 C -0.11 -4.93 9.66 22.22 0.21 -4.72 15 7 C -0.17 -9.07 8.69 22.72 0.20 -8.87 15 8 C 0.05 2.93 5.58 -21.25 -0.12 2.81 15 9 C -0.50 -28.83 8.78 23.43 0.21 -28.63 15 10 H 0.07 3.84 7.74 -2.91 -0.02 3.82 15 11 C 0.04 2.02 5.14 85.25 0.44 2.46 15 12 N -0.82 -43.30 10.96 21.83 0.24 -43.07 15 13 Si 0.98 39.35 29.60 68.60 2.03 41.38 15 14 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 15 H -0.26 -9.50 7.11 99.48 0.71 -8.79 15 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 17 C -0.06 -3.19 7.24 22.88 0.17 -3.02 15 18 F -0.17 -9.17 15.92 44.97 0.72 -8.45 15 19 H 0.08 1.88 8.14 -2.39 -0.02 1.86 15 20 H 0.06 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.03 1.09 8.14 -2.39 -0.02 1.07 15 22 H 0.05 1.90 7.63 -2.38 -0.02 1.89 15 23 H 0.09 2.76 5.92 -2.39 -0.01 2.74 15 24 H 0.07 1.79 8.14 -2.39 -0.02 1.77 15 25 H 0.07 1.88 5.91 -2.39 -0.01 1.86 15 26 H 0.06 1.74 8.08 -2.38 -0.02 1.72 15 27 H 0.12 4.69 8.06 -2.91 -0.02 4.67 15 28 H 0.11 6.06 6.16 -2.91 -0.02 6.04 15 29 H 0.29 13.81 8.30 -92.70 -0.77 13.04 15 Total: -1.00 -61.97 249.24 6.57 -55.40 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.14 Total: 14.32 kcal Atomic # 6 Polarization: -62.02 SS G_CDS: 2.44 Total: -59.57 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.24 Total: -43.07 kcal Atomic # 9 Polarization: -9.17 SS G_CDS: 0.72 Total: -8.45 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -61.97 6.57 -55.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575701582.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.845 kcal (2) G-P(sol) polarization free energy of solvation -61.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds