Wall clock time and date at job start Mon Mar 30 2020 02:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47348 * 2 1 4 4 C 1.37577 * 120.11117 * 89.99703 * 3 2 1 5 5 C 1.50696 * 119.84381 * 359.97438 * 4 3 2 6 6 C 1.38696 * 120.31612 * 180.02562 * 4 3 2 7 7 C 1.38509 * 120.54743 * 359.97438 * 6 4 3 8 8 C 1.37942 * 120.21510 * 0.25628 * 7 6 4 9 9 F 1.35090 * 120.16366 * 179.74222 * 8 7 6 10 10 C 1.40698 * 120.11583 * 269.97660 * 3 2 1 11 11 C 1.41292 * 120.26164 * 0.02562 * 10 3 2 12 12 H 1.08004 * 120.00498 * 36.48961 * 11 10 3 13 13 C 1.39942 * 119.99859 * 216.48745 * 11 10 3 14 14 N 1.30841 * 120.00150 * 19.57017 * 13 11 10 15 15 Si 1.86803 * 119.99909 * 199.57119 * 13 11 10 16 16 H 1.48500 * 109.47037 * 60.00049 * 15 13 11 17 17 H 1.48502 * 109.47164 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47121 * 300.00224 * 15 13 11 19 19 H 1.08999 * 109.47358 * 299.99856 * 1 2 3 20 20 H 1.09004 * 109.47053 * 60.00280 * 1 2 3 21 21 H 1.09001 * 109.46905 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47358 * 240.00144 * 2 1 3 23 23 H 1.09004 * 109.47053 * 119.99720 * 2 1 3 24 24 H 1.08998 * 109.47670 * 270.02515 * 5 4 3 25 25 H 1.09003 * 109.47092 * 30.02422 * 5 4 3 26 26 H 1.09002 * 109.47244 * 150.01824 * 5 4 3 27 27 H 1.08003 * 119.72739 * 180.02562 * 6 4 3 28 28 H 1.07996 * 119.89662 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99975 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0716 1.1901 5 6 2.0102 1.3604 2.4946 6 6 2.7242 3.3794 1.1951 7 6 2.9604 4.0471 0.0048 8 6 2.7328 3.4175 -1.2013 9 9 2.9585 4.0715 -2.3616 10 6 2.2682 2.0862 -1.2171 11 6 2.0353 1.4278 -2.4453 12 1 1.2038 0.7456 -2.5432 13 6 2.8821 1.6597 -3.5350 14 7 4.0763 2.1579 -3.3412 15 14 2.3075 1.2579 -5.2665 16 1 1.0923 2.0512 -5.5813 17 1 3.3824 1.5926 -6.2349 18 1 1.9912 -0.1901 -5.3596 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.9806 1.5315 2.8087 25 1 2.1772 0.2913 2.3638 26 1 2.6906 1.7440 3.2550 27 1 2.9020 3.8810 2.1349 28 1 3.3196 5.0654 0.0209 29 1 4.6634 2.3183 -4.0965 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575701738.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:11 Heat of formation + Delta-G solvation = -45.616551 kcal Electronic energy + Delta-G solvation = -13721.527639 eV Core-core repulsion = 11330.106532 eV Total energy + Delta-G solvation = -2391.421107 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -46.86739 -37.99311 -33.73572 -32.94978 -30.93307 -28.77769 -25.76385 -24.92843 -22.72127 -20.49663 -19.28039 -17.03648 -15.53514 -15.41031 -14.78306 -13.80115 -13.72688 -13.20286 -13.13565 -12.75385 -12.56062 -12.03354 -11.75119 -11.52374 -11.22399 -11.09768 -11.04212 -10.71226 -10.57357 -10.31340 -9.96161 -9.71908 -9.20884 -8.96909 -7.37646 -6.95873 -6.73583 -4.37031 2.72605 2.77620 3.11780 3.13463 3.20567 4.00177 4.61705 5.37091 5.81405 5.86729 5.89754 6.05857 6.15176 6.18572 6.30393 6.36977 6.47723 6.57703 6.66399 6.78078 6.94493 7.08541 7.15067 7.28801 7.56377 7.68699 7.86137 7.98055 8.23259 8.46847 8.83866 8.93004 10.26414 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.033088 B = 0.013790 C = 0.010482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.028013 B = 2029.975061 C = 2670.635672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.157 4.157 4 C -0.077 4.077 5 C -0.105 4.105 6 C -0.209 4.209 7 C -0.139 4.139 8 C 0.034 3.966 9 F -0.145 7.145 10 C 0.093 3.907 11 C -0.469 4.469 12 H 0.084 0.916 13 C 0.079 3.921 14 N -0.781 5.781 15 Si 0.906 3.094 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.267 1.267 19 H 0.044 0.956 20 H 0.055 0.945 21 H 0.040 0.960 22 H 0.070 0.930 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.063 -1.909 3.759 5.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.158 4.158 4 C -0.077 4.077 5 C -0.161 4.161 6 C -0.228 4.228 7 C -0.158 4.158 8 C 0.014 3.986 9 F -0.124 7.124 10 C 0.090 3.910 11 C -0.497 4.497 12 H 0.102 0.898 13 C -0.140 4.140 14 N -0.405 5.405 15 Si 0.730 3.270 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.191 1.191 19 H 0.063 0.937 20 H 0.074 0.926 21 H 0.059 0.941 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.823 -1.825 3.588 4.917 hybrid contribution 0.041 0.166 -1.056 1.069 sum -2.782 -1.659 2.532 4.111 Atomic orbital electron populations 1.21697 0.96791 0.99715 1.01548 1.20201 0.94434 0.94270 1.01139 1.19425 1.09412 0.95441 0.91557 1.19236 1.00571 0.94169 0.93743 1.20718 1.00355 0.99928 0.95133 1.20019 1.11823 0.95388 0.95609 1.20573 1.03962 0.99056 0.92235 1.17849 1.09131 0.91473 0.80174 1.91310 1.92670 1.80462 1.47959 1.17386 0.90899 0.89586 0.93105 1.19276 1.11888 1.24310 0.94275 0.89797 1.25793 0.93876 0.93217 1.01148 1.69766 1.05590 1.31102 1.34017 0.86401 0.79536 0.79608 0.81413 1.18883 1.20444 1.19128 0.93668 0.92611 0.94107 0.91182 0.93052 0.92718 0.92144 0.93177 0.88636 0.88361 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.89 37.15 0.37 -2.11 15 2 C -0.06 -1.27 5.09 -27.88 -0.14 -1.42 15 3 C -0.16 -3.69 5.19 -103.93 -0.54 -4.23 15 4 C -0.08 -1.67 5.87 -104.70 -0.61 -2.29 15 5 C -0.10 -1.79 9.59 36.00 0.35 -1.45 15 6 C -0.21 -4.62 9.70 -39.31 -0.38 -5.01 15 7 C -0.14 -3.34 10.01 -39.59 -0.40 -3.74 15 8 C 0.03 0.92 6.69 -38.64 -0.26 0.66 15 9 F -0.15 -4.07 14.28 2.25 0.03 -4.04 15 10 C 0.09 2.49 5.40 -106.76 -0.58 1.91 15 11 C -0.47 -12.43 7.72 -37.78 -0.29 -12.72 15 12 H 0.08 2.12 6.97 -52.48 -0.37 1.75 15 13 C 0.08 2.07 4.52 -17.34 -0.08 1.99 15 14 N -0.78 -21.27 11.11 55.55 0.62 -20.65 15 15 Si 0.91 19.49 29.60 -169.99 -5.03 14.45 15 16 H -0.26 -5.69 7.11 56.52 0.40 -5.29 15 17 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 19 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.05 1.05 7.73 -51.93 -0.40 0.65 15 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 22 H 0.07 1.49 6.97 -51.93 -0.36 1.13 15 23 H 0.05 0.93 5.93 -51.93 -0.31 0.62 15 24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 25 H 0.06 0.98 5.92 -51.93 -0.31 0.67 15 26 H 0.05 0.77 8.08 -51.93 -0.42 0.35 15 27 H 0.10 1.84 8.06 -52.48 -0.42 1.42 15 28 H 0.10 2.14 8.06 -52.49 -0.42 1.72 15 29 H 0.28 7.09 8.30 -40.82 -0.34 6.75 15 LS Contribution 246.40 15.07 3.71 3.71 Total: -1.00 -28.15 246.40 -6.65 -34.80 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -3.41 Total: 0.11 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: -2.56 Total: -28.39 kcal Atomic # 7 Polarization: -21.27 SS G_CDS: 0.62 Total: -20.65 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.03 Total: -4.04 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.15 -6.65 -34.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575701738.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.816 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds