Wall clock time and date at job start Mon Mar 30 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47348 * 2 1 4 4 C 1.37577 * 120.11117 * 89.99703 * 3 2 1 5 5 C 1.50696 * 119.84381 * 359.97438 * 4 3 2 6 6 C 1.38696 * 120.31612 * 180.02562 * 4 3 2 7 7 C 1.38509 * 120.54743 * 359.97438 * 6 4 3 8 8 C 1.37942 * 120.21510 * 0.25628 * 7 6 4 9 9 F 1.35090 * 120.16366 * 179.74222 * 8 7 6 10 10 C 1.40698 * 120.11583 * 269.97660 * 3 2 1 11 11 C 1.41292 * 120.26164 * 0.02562 * 10 3 2 12 12 H 1.08004 * 120.00498 * 36.48961 * 11 10 3 13 13 C 1.39942 * 119.99859 * 216.48745 * 11 10 3 14 14 N 1.30841 * 120.00150 * 19.57017 * 13 11 10 15 15 Si 1.86803 * 119.99909 * 199.57119 * 13 11 10 16 16 H 1.48500 * 109.47037 * 60.00049 * 15 13 11 17 17 H 1.48502 * 109.47164 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47121 * 300.00224 * 15 13 11 19 19 H 1.08999 * 109.47358 * 299.99856 * 1 2 3 20 20 H 1.09004 * 109.47053 * 60.00280 * 1 2 3 21 21 H 1.09001 * 109.46905 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47358 * 240.00144 * 2 1 3 23 23 H 1.09004 * 109.47053 * 119.99720 * 2 1 3 24 24 H 1.08998 * 109.47670 * 270.02515 * 5 4 3 25 25 H 1.09003 * 109.47092 * 30.02422 * 5 4 3 26 26 H 1.09002 * 109.47244 * 150.01824 * 5 4 3 27 27 H 1.08003 * 119.72739 * 180.02562 * 6 4 3 28 28 H 1.07996 * 119.89662 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99975 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0716 1.1901 5 6 2.0102 1.3604 2.4946 6 6 2.7242 3.3794 1.1951 7 6 2.9604 4.0471 0.0048 8 6 2.7328 3.4175 -1.2013 9 9 2.9585 4.0715 -2.3616 10 6 2.2682 2.0862 -1.2171 11 6 2.0353 1.4278 -2.4453 12 1 1.2038 0.7456 -2.5432 13 6 2.8821 1.6597 -3.5350 14 7 4.0763 2.1579 -3.3412 15 14 2.3075 1.2579 -5.2665 16 1 1.0923 2.0512 -5.5813 17 1 3.3824 1.5926 -6.2349 18 1 1.9912 -0.1901 -5.3596 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.9806 1.5315 2.8087 25 1 2.1772 0.2913 2.3638 26 1 2.6906 1.7440 3.2550 27 1 2.9020 3.8810 2.1349 28 1 3.3196 5.0654 0.0209 29 1 4.6634 2.3183 -4.0965 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575701738.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:10 Heat of formation + Delta-G solvation = -60.115396 kcal Electronic energy + Delta-G solvation = -13722.156356 eV Core-core repulsion = 11330.106532 eV Total energy + Delta-G solvation = -2392.049824 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.91536 -39.76661 -35.61527 -34.62038 -32.66208 -30.48676 -27.48714 -26.70204 -24.35705 -22.31788 -21.06269 -18.96256 -17.39641 -17.23280 -16.63617 -15.70391 -15.53283 -14.85981 -14.80177 -14.46230 -14.13783 -13.59030 -13.48913 -13.11818 -12.97316 -12.89786 -12.62723 -12.35257 -12.24489 -11.98562 -11.69990 -11.33678 -10.98492 -10.86050 -9.24721 -8.81057 -8.64208 -6.35228 0.87657 0.93429 1.35075 1.45720 1.48593 2.21160 2.73718 3.48816 4.15146 4.24563 4.29172 4.48159 4.66427 4.68409 4.78445 4.85672 4.97339 5.13889 5.16032 5.21428 5.27164 5.39307 5.46663 5.57079 5.75565 5.83019 6.03836 6.17444 6.36864 6.54919 6.91716 7.01234 8.37646 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.033088 B = 0.013790 C = 0.010482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.028013 B = 2029.975061 C = 2670.635672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 C -0.165 4.165 4 C -0.082 4.082 5 C -0.101 4.101 6 C -0.203 4.203 7 C -0.150 4.150 8 C -0.012 4.012 9 F -0.163 7.163 10 C 0.059 3.941 11 C -0.496 4.496 12 H 0.085 0.915 13 C 0.035 3.965 14 N -0.823 5.823 15 Si 0.972 3.028 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.252 1.252 19 H 0.057 0.943 20 H 0.033 0.967 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.131 0.869 28 H 0.113 0.887 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.924 -2.891 5.463 7.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 C -0.167 4.167 4 C -0.082 4.082 5 C -0.157 4.157 6 C -0.221 4.221 7 C -0.169 4.169 8 C -0.033 4.033 9 F -0.142 7.142 10 C 0.057 3.943 11 C -0.526 4.526 12 H 0.103 0.897 13 C -0.180 4.180 14 N -0.449 5.449 15 Si 0.793 3.207 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.176 1.176 19 H 0.076 0.924 20 H 0.052 0.948 21 H 0.089 0.911 22 H 0.067 0.933 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.131 0.869 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.691 -2.814 5.309 7.052 hybrid contribution 0.303 0.497 -1.376 1.494 sum -3.388 -2.317 3.934 5.685 Atomic orbital electron populations 1.21619 0.94752 1.01538 1.01066 1.20249 0.96138 0.92182 1.01357 1.19948 1.08348 0.97074 0.91311 1.19822 0.98770 0.94259 0.95376 1.20768 1.02161 1.00037 0.92726 1.20531 1.09752 0.95703 0.96163 1.20890 1.03862 0.99986 0.92123 1.18337 1.11835 0.92442 0.80646 1.91242 1.93120 1.80775 1.49055 1.17831 0.91940 0.89933 0.94642 1.19491 1.12446 1.25297 0.95332 0.89682 1.26635 0.93615 0.92834 1.04954 1.69841 1.06786 1.33217 1.35037 0.85399 0.78835 0.79965 0.76490 1.19057 1.19778 1.17602 0.92423 0.94779 0.91138 0.93253 0.90458 0.90627 0.91039 0.91093 0.85115 0.86864 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.89 71.98 0.71 -3.65 15 2 C -0.06 -2.40 5.09 29.85 0.15 -2.25 15 3 C -0.17 -7.65 5.19 -19.42 -0.10 -7.75 15 4 C -0.08 -3.35 5.87 -19.91 -0.12 -3.47 15 5 C -0.10 -2.97 9.59 71.23 0.68 -2.29 15 6 C -0.20 -8.48 9.70 22.44 0.22 -8.26 15 7 C -0.15 -7.17 10.01 22.26 0.22 -6.95 15 8 C -0.01 -0.68 6.69 22.88 0.15 -0.53 15 9 F -0.16 -9.55 14.28 44.97 0.64 -8.91 15 10 C 0.06 3.23 5.40 -21.25 -0.11 3.12 15 11 C -0.50 -27.14 7.72 23.43 0.18 -26.96 15 12 H 0.09 4.42 6.97 -2.91 -0.02 4.40 15 13 C 0.03 1.87 4.52 85.25 0.39 2.25 15 14 N -0.82 -46.56 11.11 21.83 0.24 -46.32 15 15 Si 0.97 40.85 29.60 68.60 2.03 42.88 15 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 15 18 H -0.25 -9.89 7.11 99.48 0.71 -9.18 15 19 H 0.06 1.74 8.14 -2.39 -0.02 1.72 15 20 H 0.03 1.25 7.73 -2.39 -0.02 1.23 15 21 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 22 H 0.05 2.09 6.97 -2.39 -0.02 2.07 15 23 H 0.08 2.54 5.93 -2.39 -0.01 2.53 15 24 H 0.08 1.97 8.14 -2.39 -0.02 1.95 15 25 H 0.07 1.97 5.92 -2.39 -0.01 1.95 15 26 H 0.07 1.83 8.08 -2.39 -0.02 1.81 15 27 H 0.13 4.50 8.06 -2.91 -0.02 4.48 15 28 H 0.11 4.91 8.06 -2.91 -0.02 4.88 15 29 H 0.28 14.85 8.30 -92.71 -0.77 14.08 15 Total: -1.00 -62.47 246.40 6.43 -56.04 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.14 Total: 13.05 kcal Atomic # 6 Polarization: -59.11 SS G_CDS: 2.37 Total: -56.74 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.24 Total: -46.32 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 0.64 Total: -8.91 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -62.47 6.43 -56.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575701738.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.076 kcal (2) G-P(sol) polarization free energy of solvation -62.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds