Wall clock time and date at job start Mon Mar 30 2020 02:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46928 * 2 1 4 4 C 1.38621 * 119.86344 * 90.00403 * 3 2 1 5 5 C 1.38844 * 120.47659 * 179.97438 * 4 3 2 6 6 F 1.35098 * 119.90010 * 179.97438 * 5 4 3 7 7 C 1.37865 * 120.19467 * 359.97438 * 5 4 3 8 8 C 1.50697 * 120.13626 * 179.97438 * 7 5 4 9 9 C 1.40655 * 119.72377 * 0.02562 * 7 5 4 10 10 C 1.41393 * 120.23290 * 179.97438 * 9 7 5 11 11 H 1.08002 * 120.00017 * 29.69513 * 10 9 7 12 12 C 1.39936 * 120.00320 * 209.69242 * 10 9 7 13 13 N 1.30819 * 120.00525 * 197.08419 * 12 10 9 14 14 Si 1.86808 * 119.99747 * 17.08229 * 12 10 9 15 15 H 1.48491 * 109.47244 * 269.99981 * 14 12 10 16 16 H 1.48501 * 109.47191 * 30.00373 * 14 12 10 17 17 H 1.48501 * 109.46874 * 150.00173 * 14 12 10 18 18 C 1.37610 * 119.86536 * 270.23777 * 3 2 1 19 19 H 1.09000 * 109.47150 * 299.99877 * 1 2 3 20 20 H 1.09005 * 109.47469 * 59.99751 * 1 2 3 21 21 H 1.08991 * 109.47325 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.46976 * 240.00366 * 2 1 3 23 23 H 1.08992 * 109.47178 * 120.00368 * 2 1 3 24 24 H 1.07999 * 119.75806 * 359.97438 * 4 3 2 25 25 H 1.08998 * 109.47577 * 270.02254 * 8 7 5 26 26 H 1.09004 * 109.47399 * 30.02271 * 8 7 5 27 27 H 1.08998 * 109.46856 * 150.01826 * 8 7 5 28 28 H 0.97002 * 119.99894 * 355.44315 * 13 12 10 29 29 H 1.07995 * 120.10233 * 0.02562 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0716 1.2021 5 6 2.7257 3.3804 1.2170 6 9 2.9455 4.0036 2.3953 7 6 2.9619 4.0458 0.0329 8 6 3.4642 5.4665 0.0506 9 6 2.7312 3.3934 -1.1917 10 6 2.9694 4.0658 -2.4125 11 1 3.7312 4.8293 -2.4688 12 6 2.2182 3.7420 -3.5479 13 7 2.6384 4.0993 -4.7341 14 14 0.6153 2.7994 -3.3696 15 1 0.8880 1.3414 -3.4393 16 1 -0.0073 3.1246 -2.0612 17 1 -0.3091 3.1830 -4.4667 18 6 2.2560 2.0685 -1.1933 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5138 0.8899 24 1 2.0801 1.5568 2.1339 25 1 2.6164 6.1516 0.0544 26 1 4.0659 5.6281 0.9450 27 1 4.0736 5.6474 -0.8348 28 1 3.4354 4.6452 -4.8222 29 1 2.0718 1.5604 -2.1283 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575701824.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:43 Heat of formation + Delta-G solvation = -72.145100 kcal Electronic energy + Delta-G solvation = -13519.595869 eV Core-core repulsion = 11127.024398 eV Total energy + Delta-G solvation = -2392.571471 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.69934 -39.95066 -36.16269 -34.91385 -31.90380 -31.66131 -27.87075 -26.51288 -23.84356 -23.23452 -21.06675 -20.03949 -17.49869 -17.41521 -16.79714 -16.46862 -15.61696 -15.27249 -14.89091 -14.73621 -14.22692 -14.05632 -13.62270 -13.54137 -13.39568 -12.78193 -12.61346 -12.46288 -11.97402 -11.89505 -11.70405 -11.61429 -11.13920 -10.92098 -9.66612 -9.26394 -9.16892 -6.63546 0.58447 0.66317 1.35194 1.52470 1.74296 2.15596 2.51413 3.28638 3.59268 4.03430 4.20052 4.34169 4.35419 4.56044 4.61952 4.74523 4.78964 4.84683 4.96846 5.05657 5.10666 5.20053 5.41564 5.42799 5.55486 5.60626 5.71483 5.84303 6.04736 6.35475 6.56822 6.75656 7.97048 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.016750 C = 0.010651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.020766 B = 1671.255343 C = 2628.267676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.022 4.022 4 C -0.260 4.260 5 C 0.116 3.884 6 F -0.155 7.155 7 C -0.244 4.244 8 C -0.079 4.079 9 C 0.099 3.901 10 C -0.536 4.536 11 H 0.059 0.941 12 C 0.013 3.987 13 N -0.840 5.840 14 Si 1.097 2.903 15 H -0.251 1.251 16 H -0.263 1.263 17 H -0.282 1.282 18 C -0.257 4.257 19 H 0.056 0.944 20 H 0.041 0.959 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.135 0.865 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.279 0.721 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 -6.040 6.969 10.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.022 4.022 4 C -0.279 4.279 5 C 0.097 3.903 6 F -0.134 7.134 7 C -0.246 4.246 8 C -0.136 4.136 9 C 0.096 3.904 10 C -0.565 4.565 11 H 0.077 0.923 12 C -0.201 4.201 13 N -0.463 5.463 14 Si 0.918 3.082 15 H -0.176 1.176 16 H -0.188 1.188 17 H -0.209 1.209 18 C -0.276 4.276 19 H 0.075 0.925 20 H 0.060 0.940 21 H 0.102 0.898 22 H 0.092 0.908 23 H 0.108 0.892 24 H 0.153 0.847 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.068 -6.632 6.061 10.315 hybrid contribution 1.911 1.502 0.682 2.524 sum -3.157 -5.131 6.743 9.042 Atomic orbital electron populations 1.21749 0.93931 1.02833 1.01721 1.20620 0.96951 0.90987 1.03517 1.19677 0.94573 0.96532 0.91460 1.20582 1.14498 0.94016 0.98818 1.17577 1.01145 0.92087 0.79531 1.91346 1.92816 1.83113 1.46145 1.20097 1.14395 0.98242 0.91889 1.20287 0.99943 0.92410 1.00963 1.17600 0.89109 0.91639 0.92041 1.20622 1.19335 1.21039 0.95528 0.92282 1.28228 1.05071 0.96128 0.90645 1.70603 1.23635 1.27015 1.25092 0.83325 0.71350 0.76714 0.76782 1.17626 1.18785 1.20851 1.21216 1.13531 0.95237 0.97663 0.92452 0.94009 0.89766 0.90840 0.89239 0.84721 0.92508 0.92239 0.92996 0.90985 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.89 71.98 0.71 -3.06 15 2 C -0.08 -2.46 6.05 29.85 0.18 -2.28 15 3 C -0.02 -0.87 5.12 -19.92 -0.10 -0.98 15 4 C -0.26 -10.29 9.68 22.51 0.22 -10.07 15 5 C 0.12 5.07 7.23 22.33 0.16 5.24 15 6 F -0.16 -6.39 16.46 44.97 0.74 -5.65 15 7 C -0.24 -11.65 5.94 -19.36 -0.12 -11.76 15 8 C -0.08 -3.41 9.44 71.23 0.67 -2.74 15 9 C 0.10 5.02 5.13 -21.30 -0.11 4.91 15 10 C -0.54 -29.11 8.79 23.46 0.21 -28.90 15 11 H 0.06 3.37 6.52 -2.91 -0.02 3.35 15 12 C 0.01 0.71 5.42 85.26 0.46 1.17 15 13 N -0.84 -45.69 13.65 21.82 0.30 -45.39 15 14 Si 1.10 47.86 24.90 68.60 1.71 49.57 15 15 H -0.25 -9.91 6.45 99.48 0.64 -9.26 15 16 H -0.26 -11.44 7.02 99.48 0.70 -10.74 15 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 18 C -0.26 -11.83 6.90 22.74 0.16 -11.67 15 19 H 0.06 1.46 8.14 -2.39 -0.02 1.44 15 20 H 0.04 1.19 8.14 -2.38 -0.02 1.17 15 21 H 0.08 1.65 8.14 -2.39 -0.02 1.63 15 22 H 0.07 2.09 8.08 -2.38 -0.02 2.07 15 23 H 0.09 2.21 8.08 -2.39 -0.02 2.19 15 24 H 0.13 4.52 8.06 -2.91 -0.02 4.49 15 25 H 0.06 2.32 8.14 -2.39 -0.02 2.30 15 26 H 0.06 2.29 7.63 -2.39 -0.02 2.27 15 27 H 0.05 2.30 6.30 -2.39 -0.02 2.28 15 28 H 0.28 15.03 8.73 -92.71 -0.81 14.22 15 29 H 0.11 5.01 4.44 -2.91 -0.01 5.00 15 Total: -1.00 -56.52 245.60 6.22 -50.30 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.03 Total: 11.31 kcal Atomic # 6 Polarization: -62.59 SS G_CDS: 2.44 Total: -60.14 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.30 Total: -45.39 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.74 Total: -5.65 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.71 Total: 49.57 kcal Total: -56.52 6.22 -50.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575701824.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.843 kcal (2) G-P(sol) polarization free energy of solvation -56.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds