Wall clock time and date at job start Mon Mar 30 2020 02:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47017 * 2 1 4 4 C 1.38624 * 119.76104 * 100.02472 * 3 2 1 5 5 C 1.37607 * 120.27657 * 180.02562 * 4 3 2 6 6 C 1.50698 * 120.10276 * 180.02562 * 5 4 3 7 7 C 1.40748 * 119.79409 * 359.97438 * 5 4 3 8 8 C 1.41397 * 120.22922 * 179.97438 * 7 5 4 9 9 H 1.08001 * 120.00256 * 25.32897 * 8 7 5 10 10 C 1.39943 * 120.00148 * 205.31844 * 8 7 5 11 11 N 1.30830 * 119.99888 * 15.09800 * 10 8 7 12 12 Si 1.86792 * 120.00282 * 195.09987 * 10 8 7 13 13 H 1.48509 * 109.47259 * 59.99988 * 12 10 8 14 14 H 1.48497 * 109.47548 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46953 * 300.00314 * 12 10 8 16 16 C 1.40661 * 119.53741 * 359.71413 * 7 5 4 17 17 C 1.37858 * 119.72021 * 0.55923 * 16 7 5 18 18 F 1.35105 * 119.90315 * 179.73294 * 17 16 7 19 19 H 1.09009 * 109.47099 * 59.99663 * 1 2 3 20 20 H 1.09000 * 109.47064 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47267 * 299.99902 * 1 2 3 22 22 H 1.09009 * 109.46996 * 240.00657 * 2 1 3 23 23 H 1.08995 * 109.47237 * 120.00528 * 2 1 3 24 24 H 1.07999 * 119.86147 * 359.97438 * 4 3 2 25 25 H 1.08994 * 109.47066 * 89.99943 * 6 5 4 26 26 H 1.09000 * 109.47056 * 209.99739 * 6 5 4 27 27 H 1.09001 * 109.46736 * 329.99292 * 6 5 4 28 28 H 0.96995 * 120.00279 * 180.02562 * 11 10 8 29 29 H 1.08002 * 120.14186 * 180.30970 * 16 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4592 1.9997 1.1850 5 6 2.9193 3.2965 1.1973 6 6 3.3830 3.9218 2.4877 7 6 2.9567 4.0367 0.0008 8 6 3.4273 5.3701 0.0029 9 1 4.1167 5.6982 0.7668 10 6 3.0000 6.2645 -0.9849 11 7 1.9599 5.9751 -1.7238 12 14 3.9148 7.8717 -1.2486 13 1 5.3260 7.5844 -1.6110 14 1 3.2681 8.6351 -2.3459 15 1 3.8779 8.6729 0.0011 16 6 2.5278 3.4390 -1.1981 17 6 2.0651 2.1404 -1.1870 18 9 1.6471 1.5644 -2.3354 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 2.4296 1.4309 2.1026 25 1 4.4488 3.7357 2.6192 26 1 3.2030 4.9964 2.4559 27 1 2.8323 3.4857 3.3211 28 1 1.6639 6.5948 -2.4087 29 1 2.5569 3.9963 -2.1227 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575701906.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:48 Heat of formation + Delta-G solvation = -56.933743 kcal Electronic energy + Delta-G solvation = -13394.737625 eV Core-core repulsion = 11002.825768 eV Total energy + Delta-G solvation = -2391.911857 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.59896 -37.80330 -34.36916 -32.74181 -30.58225 -28.98522 -26.09720 -24.82934 -22.41600 -20.95175 -19.14568 -17.53850 -15.87286 -15.12625 -14.67587 -14.39857 -13.96251 -13.18621 -12.93152 -12.67683 -12.55507 -12.43334 -12.06682 -11.63572 -11.36659 -11.18518 -10.96310 -10.78673 -10.41269 -10.36547 -10.00185 -9.76955 -9.42705 -9.18784 -7.44211 -7.14369 -6.79404 -4.45969 2.63821 2.83315 3.03212 3.05037 3.13360 3.86997 4.47449 5.44701 5.59480 5.71197 5.81898 6.05828 6.16544 6.31908 6.38240 6.43368 6.47395 6.60930 6.62573 6.78869 6.90943 7.00467 7.09004 7.27662 7.59510 7.67212 7.83615 7.94382 8.21328 8.51608 8.78795 8.83128 10.10990 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.039923 B = 0.010491 C = 0.008747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.186770 B = 2668.226269 C = 3200.165075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C -0.241 4.241 4 C -0.065 4.065 5 C -0.203 4.203 6 C -0.084 4.084 7 C 0.129 3.871 8 C -0.453 4.453 9 H 0.084 0.916 10 C 0.074 3.926 11 N -0.790 5.790 12 Si 0.911 3.089 13 H -0.263 1.263 14 H -0.278 1.278 15 H -0.264 1.264 16 C -0.198 4.198 17 C 0.105 3.895 18 F -0.167 7.167 19 H 0.051 0.949 20 H 0.042 0.958 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.096 0.904 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.283 0.717 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 -2.921 2.404 3.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 C -0.243 4.243 4 C -0.083 4.083 5 C -0.204 4.204 6 C -0.140 4.140 7 C 0.126 3.874 8 C -0.482 4.482 9 H 0.102 0.898 10 C -0.145 4.145 11 N -0.414 5.414 12 Si 0.735 3.265 13 H -0.187 1.187 14 H -0.203 1.203 15 H -0.189 1.189 16 C -0.218 4.218 17 C 0.086 3.914 18 F -0.146 7.146 19 H 0.071 0.929 20 H 0.061 0.939 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.114 0.886 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.276 -2.833 2.174 3.581 hybrid contribution 0.174 0.689 -0.451 0.842 sum 0.450 -2.144 1.722 2.786 Atomic orbital electron populations 1.21753 0.96510 0.99907 1.01879 1.20070 0.94906 0.93968 1.00598 1.19062 1.15473 0.96746 0.92988 1.20125 0.98734 0.94320 0.95107 1.19795 1.10425 0.95321 0.94879 1.20387 0.98759 1.00792 0.94109 1.17232 0.88476 0.92497 0.89201 1.19575 1.24096 0.94327 1.10223 0.89817 1.25983 0.93685 1.00553 0.94273 1.69802 1.18632 1.36507 1.16487 0.86313 0.80614 0.80649 0.78885 1.18734 1.20275 1.18877 1.21306 1.07969 0.92134 1.00371 1.17523 1.01003 0.92496 0.80360 1.91309 1.88592 1.85247 1.49428 0.92942 0.93889 0.93047 0.92875 0.92656 0.88600 0.93892 0.91942 0.94249 0.90594 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.89 37.16 0.37 -2.08 15 2 C -0.06 -1.08 5.77 -27.88 -0.16 -1.24 15 3 C -0.24 -5.44 5.17 -104.26 -0.54 -5.98 15 4 C -0.06 -1.43 9.29 -39.67 -0.37 -1.80 15 5 C -0.20 -4.80 5.94 -103.91 -0.62 -5.42 15 6 C -0.08 -1.68 9.40 36.00 0.34 -1.34 15 7 C 0.13 3.37 5.57 -106.83 -0.60 2.78 15 8 C -0.45 -11.60 8.15 -37.74 -0.31 -11.91 15 9 H 0.08 2.02 6.85 -52.49 -0.36 1.67 15 10 C 0.07 1.81 5.19 -17.34 -0.09 1.72 15 11 N -0.79 -20.30 10.87 55.55 0.60 -19.70 15 12 Si 0.91 18.26 29.58 -169.99 -5.03 13.23 15 13 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15 14 H -0.28 -5.46 7.11 56.52 0.40 -5.06 15 15 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 16 C -0.20 -5.27 8.66 -38.81 -0.34 -5.60 15 17 C 0.11 2.62 7.22 -39.50 -0.29 2.34 15 18 F -0.17 -4.01 16.64 2.25 0.04 -3.98 15 19 H 0.05 0.96 8.14 -51.92 -0.42 0.54 15 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 22 H 0.05 0.98 7.93 -51.92 -0.41 0.57 15 23 H 0.05 0.92 7.99 -51.93 -0.42 0.51 15 24 H 0.10 1.86 8.03 -52.49 -0.42 1.44 15 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 26 H 0.06 1.27 6.77 -51.93 -0.35 0.92 15 27 H 0.04 0.69 8.09 -51.93 -0.42 0.27 15 28 H 0.28 6.65 8.30 -40.82 -0.34 6.31 15 29 H 0.13 3.59 6.14 -52.49 -0.32 3.27 15 LS Contribution 251.31 15.07 3.79 3.79 Total: -1.00 -26.66 251.31 -6.72 -33.38 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.53 Total: 1.81 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -2.59 Total: -28.54 kcal Atomic # 7 Polarization: -20.30 SS G_CDS: 0.60 Total: -19.70 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.04 Total: -3.98 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.66 -6.72 -33.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575701906.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.554 kcal (2) G-P(sol) polarization free energy of solvation -26.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds