Wall clock time and date at job start Mon Mar 30 2020 02:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47169 * 2 1 4 4 C 1.38509 * 119.88808 * 99.98023 * 3 2 1 5 5 C 1.38694 * 120.54391 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.84243 * 179.97438 * 5 4 3 7 7 C 1.37582 * 120.31902 * 0.02562 * 5 4 3 8 8 C 1.40696 * 119.77000 * 359.97438 * 7 5 4 9 9 C 1.41302 * 120.26371 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99954 * 204.51906 * 9 8 7 11 11 C 1.39935 * 119.99404 * 24.52852 * 9 8 7 12 12 N 1.30844 * 120.00636 * 17.76156 * 11 9 8 13 13 Si 1.86804 * 119.99628 * 197.76911 * 11 9 8 14 14 H 1.48497 * 109.47382 * 59.99270 * 13 11 9 15 15 H 1.48502 * 109.47214 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46873 * 299.99535 * 13 11 9 17 17 C 1.37940 * 119.89603 * 280.00058 * 3 2 1 18 18 F 1.35097 * 120.15738 * 359.70428 * 17 3 2 19 19 H 1.09008 * 109.47113 * 59.99675 * 1 2 3 20 20 H 1.08994 * 109.47025 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47174 * 299.99766 * 1 2 3 22 22 H 1.09012 * 109.47057 * 240.00524 * 2 1 3 23 23 H 1.08996 * 109.47034 * 120.00716 * 2 1 3 24 24 H 1.08000 * 119.72863 * 0.04226 * 4 3 2 25 25 H 1.08997 * 109.47672 * 89.99742 * 6 5 4 26 26 H 1.09003 * 109.47050 * 210.00047 * 6 5 4 27 27 H 1.09000 * 109.46952 * 329.99479 * 6 5 4 28 28 H 1.08001 * 120.11332 * 179.97438 * 7 5 4 29 29 H 0.96996 * 120.00330 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4586 2.0022 1.1827 5 6 2.9230 3.3089 1.1984 6 6 3.3824 3.9260 2.4943 7 6 2.9653 4.0450 0.0369 8 6 2.5356 3.4677 -1.1721 9 6 2.5740 4.2143 -2.3711 10 1 1.9137 3.9600 -3.1870 11 6 3.4678 5.2832 -2.5013 12 7 4.4887 5.3850 -1.6893 13 14 3.2032 6.5648 -3.8343 14 1 1.8858 7.2207 -3.6360 15 1 4.2798 7.5850 -3.7608 16 1 3.2335 5.9076 -5.1657 17 6 2.0657 2.1382 -1.1777 18 9 1.6549 1.5682 -2.3315 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 2.4294 1.4331 2.1002 25 1 4.4475 3.7377 2.6289 26 1 3.2039 5.0010 2.4682 27 1 2.8280 3.4856 3.3230 28 1 3.3272 5.0625 0.0530 29 1 5.1080 6.1261 -1.7793 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575702248.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:50 Heat of formation + Delta-G solvation = -70.693480 kcal Electronic energy + Delta-G solvation = -13417.145355 eV Core-core repulsion = 11024.636831 eV Total energy + Delta-G solvation = -2392.508524 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.16789 -39.55816 -36.14565 -34.75534 -32.59145 -30.31063 -27.56727 -26.84149 -24.59325 -22.52156 -20.91312 -18.89237 -17.89080 -17.36617 -16.49785 -16.05863 -15.47998 -14.74748 -14.59120 -14.41777 -14.20115 -13.97659 -13.56370 -13.37636 -13.21315 -12.87950 -12.61373 -12.46022 -12.24271 -11.92590 -11.77143 -11.52702 -11.21052 -11.02937 -9.37436 -8.96961 -8.67645 -6.42547 0.82088 0.91851 1.34499 1.45784 1.49726 2.17371 2.61862 3.49501 4.01693 4.06624 4.23735 4.46454 4.56120 4.61271 4.80213 4.87439 4.93193 4.96381 5.03868 5.07667 5.19813 5.23221 5.37304 5.49224 5.66753 5.82532 6.07455 6.13127 6.23096 6.58889 6.77609 6.93320 8.25246 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032420 B = 0.011713 C = 0.009007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.468856 B = 2389.947409 C = 3107.844995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.088 4.088 4 C -0.211 4.211 5 C -0.085 4.085 6 C -0.096 4.096 7 C -0.174 4.174 8 C 0.056 3.944 9 C -0.500 4.500 10 H 0.066 0.934 11 C 0.040 3.960 12 N -0.817 5.817 13 Si 0.984 3.016 14 H -0.259 1.259 15 H -0.259 1.259 16 H -0.263 1.263 17 C -0.066 4.066 18 F -0.171 7.171 19 H 0.032 0.968 20 H 0.080 0.920 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.090 0.910 24 H 0.132 0.868 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 -2.413 4.634 5.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 C -0.089 4.089 4 C -0.230 4.230 5 C -0.085 4.085 6 C -0.152 4.152 7 C -0.193 4.193 8 C 0.053 3.947 9 C -0.529 4.529 10 H 0.085 0.915 11 C -0.176 4.176 12 N -0.442 5.442 13 Si 0.804 3.196 14 H -0.184 1.184 15 H -0.183 1.183 16 H -0.188 1.188 17 C -0.086 4.086 18 F -0.150 7.150 19 H 0.051 0.949 20 H 0.099 0.901 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.108 0.892 24 H 0.150 0.850 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.237 -2.300 4.650 5.649 hybrid contribution 0.034 0.533 -1.151 1.269 sum -2.203 -1.767 3.499 4.497 Atomic orbital electron populations 1.21647 0.94075 1.02345 1.01252 1.20430 0.96913 0.91424 1.02514 1.19803 1.00312 0.96869 0.91893 1.20430 1.10135 0.95816 0.96628 1.20068 0.98138 0.94654 0.95668 1.20656 1.01133 1.00024 0.93416 1.21042 1.07261 1.00165 0.90846 1.18012 0.91571 0.89993 0.95103 1.19629 1.19350 1.13547 1.00398 0.91545 1.26716 0.92384 0.99159 0.99376 1.69842 1.09295 1.29163 1.35901 0.85232 0.79499 0.77075 0.77799 1.18367 1.18274 1.18782 1.18021 1.15675 0.93258 0.81683 1.91199 1.89584 1.84883 1.49378 0.94886 0.90100 0.92295 0.92580 0.89161 0.84986 0.91392 0.92414 0.90167 0.87085 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.89 71.98 0.71 -3.51 15 2 C -0.08 -2.67 5.78 29.85 0.17 -2.49 15 3 C -0.09 -3.96 5.14 -19.87 -0.10 -4.06 15 4 C -0.21 -8.89 9.32 22.44 0.21 -8.68 15 5 C -0.08 -3.79 5.87 -19.91 -0.12 -3.91 15 6 C -0.10 -3.27 10.00 71.23 0.71 -2.55 15 7 C -0.17 -9.17 8.33 22.72 0.19 -8.98 15 8 C 0.06 3.20 5.58 -21.25 -0.12 3.08 15 9 C -0.50 -28.71 8.78 23.43 0.21 -28.50 15 10 H 0.07 3.83 7.74 -2.91 -0.02 3.81 15 11 C 0.04 2.05 5.14 85.25 0.44 2.49 15 12 N -0.82 -42.94 10.96 21.83 0.24 -42.70 15 13 Si 0.98 39.21 29.60 68.60 2.03 41.24 15 14 H -0.26 -10.11 7.11 99.48 0.71 -9.41 15 15 H -0.26 -9.45 7.11 99.48 0.71 -8.74 15 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 17 C -0.07 -3.55 7.24 22.88 0.17 -3.38 15 18 F -0.17 -9.18 16.10 44.97 0.72 -8.45 15 19 H 0.03 1.15 8.14 -2.38 -0.02 1.13 15 20 H 0.08 1.96 8.14 -2.39 -0.02 1.94 15 21 H 0.06 1.74 8.14 -2.39 -0.02 1.72 15 22 H 0.06 2.03 7.93 -2.38 -0.02 2.01 15 23 H 0.09 2.65 7.99 -2.39 -0.02 2.63 15 24 H 0.13 4.55 8.03 -2.91 -0.02 4.53 15 25 H 0.07 2.18 8.14 -2.39 -0.02 2.16 15 26 H 0.06 1.92 8.08 -2.39 -0.02 1.90 15 27 H 0.08 2.25 8.08 -2.39 -0.02 2.23 15 28 H 0.11 6.04 6.16 -2.91 -0.02 6.03 15 29 H 0.29 13.73 8.30 -92.71 -0.77 12.96 15 Total: -1.00 -61.77 253.92 6.59 -55.18 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.13 Total: 15.23 kcal Atomic # 6 Polarization: -62.96 SS G_CDS: 2.47 Total: -60.50 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.24 Total: -42.70 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 0.72 Total: -8.45 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -61.77 6.59 -55.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575702248.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.515 kcal (2) G-P(sol) polarization free energy of solvation -61.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds