Wall clock time and date at job start Mon Mar 30 2020 02:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47506 * 2 1 4 4 C 1.38510 * 119.89193 * 265.00143 * 3 2 1 5 5 C 1.38696 * 120.53922 * 180.02562 * 4 3 2 6 6 C 1.37576 * 120.32131 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.11411 * 179.97438 * 6 5 4 8 8 C 1.40704 * 119.77511 * 359.97438 * 6 5 4 9 9 C 1.41286 * 120.26467 * 179.97438 * 8 6 5 10 10 H 1.08003 * 120.00118 * 325.10024 * 9 8 6 11 11 C 1.39946 * 120.00049 * 145.09654 * 9 8 6 12 12 N 1.30840 * 119.99983 * 150.83607 * 11 9 8 13 13 Si 1.86797 * 119.99708 * 330.56341 * 11 9 8 14 14 H 1.48507 * 109.46880 * 268.49095 * 13 11 9 15 15 H 1.48502 * 109.47266 * 28.48750 * 13 11 9 16 16 H 1.48499 * 109.47191 * 148.49328 * 13 11 9 17 17 C 1.37944 * 119.88758 * 85.28390 * 3 2 1 18 18 F 1.35094 * 120.16671 * 359.97438 * 17 3 2 19 19 H 1.08994 * 109.47595 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47129 * 300.00046 * 1 2 3 21 21 H 1.09001 * 109.46994 * 59.99411 * 1 2 3 22 22 H 1.09003 * 109.47129 * 239.99954 * 2 1 3 23 23 H 1.09001 * 109.46994 * 120.00589 * 2 1 3 24 24 H 1.07997 * 119.72649 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.83720 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.47031 * 270.02212 * 7 6 5 27 27 H 1.09007 * 109.47347 * 30.01656 * 7 6 5 28 28 H 1.09000 * 109.47387 * 150.01713 * 7 6 5 29 29 H 0.96998 * 120.00127 * 179.72875 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0367 -1.1963 5 6 2.8253 3.3436 -1.2118 6 6 2.9655 4.0449 -0.0366 7 6 3.4708 5.4645 -0.0589 8 6 2.6354 3.4323 1.1863 9 6 2.7758 4.1427 2.3994 10 1 3.5848 4.8477 2.5218 11 6 1.8667 3.9330 3.4425 12 7 2.2474 4.0922 4.6841 13 14 0.1076 3.4331 3.0617 14 1 -0.7379 4.6483 2.9440 15 1 0.0728 2.6802 1.7821 16 1 -0.4108 2.5736 4.1561 17 6 2.1689 2.1016 1.1919 18 9 1.8528 1.4981 2.3585 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.2560 1.4945 -2.1244 25 1 3.0788 3.8126 -2.1510 26 1 4.5576 5.4646 0.0245 27 1 3.1782 5.9397 -0.9952 28 1 3.0421 6.0160 0.7779 29 1 1.6162 3.9506 5.4069 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575702256.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:52 Heat of formation + Delta-G solvation = -45.756770 kcal Electronic energy + Delta-G solvation = -13823.686463 eV Core-core repulsion = 11432.259276 eV Total energy + Delta-G solvation = -2391.427187 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.60110 -37.90169 -34.36282 -33.12794 -30.28775 -29.78536 -26.23409 -24.85180 -22.25079 -21.14744 -19.28648 -17.63647 -15.66029 -15.58233 -15.20560 -14.23654 -14.02811 -13.32278 -13.05768 -12.94861 -12.48746 -12.31883 -12.11939 -11.87377 -11.38150 -11.13513 -10.97532 -10.77253 -10.50150 -10.22287 -10.07083 -9.91465 -9.38618 -9.06970 -7.50878 -7.31876 -6.98725 -4.45525 2.48663 2.54157 3.18551 3.27099 3.33367 4.06266 4.41206 5.16767 5.47932 5.54015 5.74997 5.90405 5.98664 6.15140 6.21285 6.26873 6.36365 6.52748 6.55367 6.58352 6.66677 6.86628 6.94332 7.18170 7.41463 7.51439 7.65344 7.81831 8.08475 8.30556 8.63149 8.75529 10.00840 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.025738 B = 0.018821 C = 0.012548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.626580 B = 1487.332120 C = 2230.826344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.084 4.084 4 C -0.217 4.217 5 C -0.091 4.091 6 C -0.170 4.170 7 C -0.087 4.087 8 C 0.068 3.932 9 C -0.459 4.459 10 H 0.096 0.904 11 C 0.095 3.905 12 N -0.788 5.788 13 Si 0.912 3.088 14 H -0.289 1.289 15 H -0.241 1.241 16 H -0.280 1.280 17 C -0.012 4.012 18 F -0.150 7.150 19 H 0.048 0.952 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 -2.995 -6.291 7.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.085 4.085 4 C -0.236 4.236 5 C -0.110 4.110 6 C -0.171 4.171 7 C -0.144 4.144 8 C 0.065 3.935 9 C -0.486 4.486 10 H 0.114 0.886 11 C -0.127 4.127 12 N -0.410 5.410 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.164 1.164 16 H -0.205 1.205 17 C -0.032 4.032 18 F -0.129 7.129 19 H 0.067 0.933 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.520 -2.995 -5.935 7.109 hybrid contribution -0.750 -0.292 0.283 0.853 sum -3.270 -3.286 -5.651 7.309 Atomic orbital electron populations 1.21709 0.95652 1.00530 1.02157 1.20360 0.95638 0.93944 1.01654 1.19379 1.01185 0.95374 0.92564 1.20070 1.12038 0.96276 0.95254 1.20520 0.99744 0.94283 0.96424 1.19623 1.09689 0.96008 0.91789 1.20429 0.99395 0.93733 1.00806 1.17535 0.92480 0.89902 0.93588 1.19227 1.12556 1.22244 0.94527 0.88606 1.26203 1.01947 0.90706 0.93835 1.69794 1.36961 1.33855 1.00396 0.86302 0.80339 0.78236 0.81327 1.21688 1.16417 1.20545 1.17494 1.13706 0.92146 0.79852 1.91016 1.91268 1.83245 1.47403 0.93264 0.92676 0.92814 0.91866 0.91776 0.88287 0.88441 0.93484 0.93902 0.91491 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.89 37.16 0.37 -2.04 15 2 C -0.08 -1.45 5.83 -27.89 -0.16 -1.61 15 3 C -0.08 -1.86 5.13 -104.63 -0.54 -2.40 15 4 C -0.22 -4.50 9.68 -39.31 -0.38 -4.88 15 5 C -0.09 -1.91 9.68 -39.65 -0.38 -2.29 15 6 C -0.17 -3.90 5.94 -103.93 -0.62 -4.51 15 7 C -0.09 -1.72 9.44 36.01 0.34 -1.38 15 8 C 0.07 1.76 4.86 -106.76 -0.52 1.24 15 9 C -0.46 -12.50 8.23 -37.78 -0.31 -12.81 15 10 H 0.10 2.68 7.45 -52.48 -0.39 2.29 15 11 C 0.10 2.56 4.72 -17.33 -0.08 2.48 15 12 N -0.79 -21.39 13.93 55.55 0.77 -20.62 15 13 Si 0.91 21.97 25.42 -169.99 -4.32 17.65 15 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 15 H -0.24 -5.91 5.25 56.52 0.30 -5.62 15 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 17 C -0.01 -0.30 4.97 -38.64 -0.19 -0.50 15 18 F -0.15 -3.88 12.11 2.25 0.03 -3.85 15 19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.05 1.03 8.08 -51.93 -0.42 0.61 15 21 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.06 1.01 8.05 -51.93 -0.42 0.59 15 23 H 0.06 1.19 7.77 -51.93 -0.40 0.79 15 24 H 0.10 1.78 8.06 -52.49 -0.42 1.35 15 25 H 0.10 1.74 8.06 -52.49 -0.42 1.31 15 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 15 27 H 0.04 0.73 8.09 -51.92 -0.42 0.31 15 28 H 0.07 1.38 6.94 -51.93 -0.36 1.02 15 29 H 0.29 7.05 8.30 -40.82 -0.34 6.71 15 LS Contribution 244.50 15.07 3.68 3.68 Total: -1.00 -27.75 244.50 -6.08 -33.83 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -3.77 Total: -2.02 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: -2.48 Total: -28.69 kcal Atomic # 7 Polarization: -21.39 SS G_CDS: 0.77 Total: -20.62 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.03 Total: -3.85 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.32 Total: 17.65 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -27.75 -6.08 -33.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575702256.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.925 kcal (2) G-P(sol) polarization free energy of solvation -27.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds