Wall clock time and date at job start Mon Mar 30 2020 02:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47365 * 2 1 4 4 C 1.36579 * 120.11688 * 265.28576 * 3 2 1 5 5 C 1.38921 * 120.22105 * 180.29751 * 4 3 2 6 6 F 1.35101 * 119.78427 * 179.69369 * 5 4 3 7 7 C 1.38963 * 120.43876 * 359.67191 * 5 4 3 8 8 C 1.50695 * 119.89117 * 180.02562 * 7 5 4 9 9 C 1.36552 * 120.21843 * 0.04487 * 7 5 4 10 10 C 1.40750 * 120.10878 * 85.00323 * 3 2 1 11 11 C 1.41323 * 120.21615 * 359.97438 * 10 3 2 12 12 H 1.07999 * 119.99513 * 334.52137 * 11 10 3 13 13 C 1.39915 * 120.00220 * 154.79416 * 11 10 3 14 14 N 1.30853 * 120.00013 * 342.37132 * 13 11 10 15 15 Si 1.86799 * 120.00002 * 162.36751 * 13 11 10 16 16 H 1.48507 * 109.46860 * 90.00244 * 15 13 11 17 17 H 1.48500 * 109.47047 * 209.99979 * 15 13 11 18 18 H 1.48498 * 109.47102 * 330.00341 * 15 13 11 19 19 H 1.09000 * 109.47421 * 59.99244 * 1 2 3 20 20 H 1.08996 * 109.47493 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46784 * 299.99843 * 1 2 3 22 22 H 1.09007 * 109.47007 * 240.00637 * 2 1 3 23 23 H 1.09000 * 109.47421 * 120.00756 * 2 1 3 24 24 H 1.07996 * 119.89361 * 359.97438 * 4 3 2 25 25 H 1.09004 * 109.47422 * 270.02490 * 8 7 5 26 26 H 1.09001 * 109.47364 * 30.02530 * 8 7 5 27 27 H 1.09003 * 109.47271 * 150.02538 * 8 7 5 28 28 H 1.07997 * 120.10746 * 179.97438 * 9 7 5 29 29 H 0.96996 * 120.00356 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3523 2.0345 -1.1774 5 6 2.8215 3.3421 -1.1794 6 9 3.1413 3.9386 -2.3487 7 6 2.9637 4.0409 0.0133 8 6 3.4732 5.4590 -0.0033 9 6 2.6436 3.4467 1.2003 10 6 2.1677 2.1218 1.2130 11 6 1.8332 1.4980 2.4361 12 1 1.1171 0.6897 2.4518 13 6 2.4253 1.9314 3.6274 14 7 3.5165 2.6526 3.5911 15 14 1.6580 1.4804 5.2698 16 1 2.2273 0.1940 5.7455 17 1 1.9485 2.5470 6.2613 18 1 0.1884 1.3418 5.1081 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 2.2453 1.4998 -2.1096 25 1 4.5601 5.4556 0.0797 26 1 3.1817 5.9390 -0.9375 27 1 3.0465 6.0083 0.8360 28 1 2.7551 3.9913 2.1262 29 1 3.9269 2.9533 4.4169 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575702541.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:09 Heat of formation + Delta-G solvation = -67.872447 kcal Electronic energy + Delta-G solvation = -13445.155515 eV Core-core repulsion = 11052.769320 eV Total energy + Delta-G solvation = -2392.386195 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.28115 -39.78273 -35.57951 -35.23532 -31.73512 -31.25236 -27.51633 -26.87598 -23.66336 -23.09018 -21.08081 -18.96017 -17.51683 -17.34611 -16.53788 -16.14419 -15.56348 -14.85643 -14.72760 -14.35750 -14.08591 -13.77158 -13.55484 -13.34936 -13.04515 -12.96579 -12.73025 -12.40686 -12.25752 -11.78016 -11.74311 -11.43678 -11.10796 -10.91871 -9.32077 -9.06660 -8.63939 -6.29639 0.79770 0.99263 1.41462 1.48381 1.56023 2.21219 2.64762 3.59828 3.95775 4.20097 4.23004 4.43251 4.57643 4.65920 4.76453 4.81135 4.99900 5.03145 5.10360 5.18182 5.20521 5.37501 5.44493 5.54103 5.71032 5.86692 6.01124 6.14411 6.33247 6.63888 6.92221 7.00107 8.31394 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.029229 B = 0.012660 C = 0.009249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.732114 B = 2211.228689 C = 3026.788466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.057 4.057 3 C -0.184 4.184 4 C -0.117 4.117 5 C -0.067 4.067 6 F -0.170 7.170 7 C -0.111 4.111 8 C -0.097 4.097 9 C -0.168 4.168 10 C 0.082 3.918 11 C -0.474 4.474 12 H 0.089 0.911 13 C 0.035 3.965 14 N -0.819 5.819 15 Si 0.978 3.022 16 H -0.262 1.262 17 H -0.270 1.270 18 H -0.257 1.257 19 H 0.048 0.952 20 H 0.071 0.929 21 H 0.042 0.958 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.121 0.879 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.947 -1.377 -0.645 3.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.095 4.095 3 C -0.185 4.185 4 C -0.135 4.135 5 C -0.086 4.086 6 F -0.149 7.149 7 C -0.112 4.112 8 C -0.154 4.154 9 C -0.188 4.188 10 C 0.080 3.920 11 C -0.502 4.502 12 H 0.107 0.893 13 C -0.181 4.181 14 N -0.445 5.445 15 Si 0.799 3.201 16 H -0.187 1.187 17 H -0.194 1.194 18 H -0.180 1.180 19 H 0.067 0.933 20 H 0.089 0.911 21 H 0.061 0.939 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.139 0.861 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.130 0.870 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.752 -1.243 -0.540 3.067 hybrid contribution 0.131 0.166 0.450 0.497 sum -2.620 -1.078 -0.090 2.835 Atomic orbital electron populations 1.21661 0.94866 1.01579 1.01143 1.20161 0.96149 0.91921 1.01237 1.19710 1.09308 0.97386 0.92121 1.20412 1.01504 0.93195 0.98438 1.17352 1.16551 0.94410 0.80316 1.91249 1.92339 1.84313 1.47044 1.19662 1.01796 0.97421 0.92297 1.20577 1.00712 0.91883 1.02187 1.20852 1.06610 0.95688 0.95649 1.17898 0.89687 0.91315 0.93123 1.19854 1.22363 1.16774 0.91224 0.89256 1.26799 0.93494 0.92958 1.04849 1.69883 1.14936 1.27948 1.31714 0.85254 0.79866 0.78938 0.76057 1.18692 1.19438 1.18033 0.93292 0.91052 0.93886 0.91676 0.92269 0.86133 0.91601 0.91699 0.91363 0.86951 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 9.78 71.98 0.70 -3.84 15 2 C -0.06 -2.22 5.40 29.85 0.16 -2.06 15 3 C -0.18 -8.62 5.16 -19.64 -0.10 -8.72 15 4 C -0.12 -5.34 9.59 22.05 0.21 -5.13 15 5 C -0.07 -3.19 7.26 22.61 0.16 -3.02 15 6 F -0.17 -7.70 16.46 44.97 0.74 -6.96 15 7 C -0.11 -5.33 5.85 -20.09 -0.12 -5.45 15 8 C -0.10 -3.82 9.82 71.23 0.70 -3.12 15 9 C -0.17 -8.76 8.28 22.50 0.19 -8.57 15 10 C 0.08 4.27 5.57 -21.29 -0.12 4.15 15 11 C -0.47 -23.80 8.11 23.44 0.19 -23.61 15 12 H 0.09 4.25 6.08 -2.91 -0.02 4.23 15 13 C 0.03 1.67 5.14 85.24 0.44 2.10 15 14 N -0.82 -41.17 10.97 21.82 0.24 -40.93 15 15 Si 0.98 36.25 29.59 68.60 2.03 38.28 15 16 H -0.26 -9.38 7.11 99.48 0.71 -8.67 15 17 H -0.27 -9.65 7.11 99.48 0.71 -8.95 15 18 H -0.26 -9.30 7.11 99.48 0.71 -8.60 15 19 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 20 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 21 H 0.04 1.57 7.30 -2.38 -0.02 1.55 15 22 H 0.06 2.23 8.05 -2.38 -0.02 2.21 15 23 H 0.06 2.38 7.05 -2.39 -0.02 2.37 15 24 H 0.12 4.85 8.06 -2.91 -0.02 4.83 15 25 H 0.07 2.46 8.14 -2.38 -0.02 2.44 15 26 H 0.06 2.36 7.63 -2.39 -0.02 2.34 15 27 H 0.07 2.49 8.08 -2.39 -0.02 2.48 15 28 H 0.11 6.02 6.18 -2.91 -0.02 6.00 15 29 H 0.29 13.15 8.30 -92.71 -0.77 12.38 15 Total: -1.00 -55.38 249.45 6.57 -48.81 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 1.14 Total: 18.09 kcal Atomic # 6 Polarization: -59.70 SS G_CDS: 2.42 Total: -57.28 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.24 Total: -40.93 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 0.74 Total: -6.96 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 2.03 Total: 38.28 kcal Total: -55.38 6.57 -48.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575702541.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.064 kcal (2) G-P(sol) polarization free energy of solvation -55.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds