Wall clock time and date at job start Mon Mar 30 2020 02:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50706 * 109.46364 * 2 1 4 4 C 1.38714 * 119.72889 * 264.99395 * 3 2 1 5 5 C 1.36543 * 120.45410 * 179.97438 * 4 3 2 6 6 C 1.40718 * 119.89413 * 0.02562 * 5 4 3 7 7 C 1.41296 * 120.26683 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00503 * 150.15346 * 7 6 5 9 9 C 1.39944 * 119.99638 * 330.14405 * 7 6 5 10 10 N 1.30845 * 119.99803 * 161.77262 * 9 7 6 11 11 Si 1.86796 * 120.00305 * 341.78013 * 9 7 6 12 12 H 1.48503 * 109.47310 * 95.40340 * 11 9 7 13 13 H 1.48493 * 109.47104 * 215.40366 * 11 9 7 14 14 H 1.48501 * 109.47041 * 335.40397 * 11 9 7 15 15 C 1.40993 * 119.47161 * 0.02562 * 6 5 4 16 16 F 1.35093 * 120.22573 * 179.97438 * 15 6 5 17 17 C 1.38024 * 119.54741 * 359.71879 * 15 6 5 18 18 C 1.50696 * 119.95186 * 180.29507 * 17 15 6 19 19 H 1.08996 * 109.47155 * 299.99830 * 1 2 3 20 20 H 1.08996 * 109.47263 * 60.00452 * 1 2 3 21 21 H 1.09002 * 109.46528 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47263 * 119.99548 * 2 1 3 23 23 H 1.08996 * 109.47155 * 240.00170 * 2 1 3 24 24 H 1.08007 * 119.77187 * 359.97438 * 4 3 2 25 25 H 1.08003 * 120.05230 * 180.02562 * 5 4 3 26 26 H 0.96998 * 120.00380 * 180.02562 * 10 9 7 27 27 H 1.09002 * 109.47053 * 270.23361 * 18 17 15 28 28 H 1.08997 * 109.47655 * 30.23783 * 18 17 15 29 29 H 1.09005 * 109.46950 * 150.23850 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3605 2.0345 -1.2000 5 6 2.8164 3.3215 -1.2172 6 6 2.9556 4.0324 -0.0109 7 6 3.4261 5.3647 -0.0196 8 1 3.1039 6.0563 0.7447 9 6 4.3098 5.7881 -1.0187 10 7 4.4697 7.0655 -1.2524 11 14 5.2611 4.5295 -2.0190 12 1 4.5356 4.2524 -3.2847 13 1 6.6119 5.0624 -2.3292 14 1 5.3919 3.2731 -1.2381 15 6 2.6218 3.4047 1.2067 16 9 2.7501 4.0729 2.3738 17 6 2.1581 2.1048 1.1976 18 6 1.7924 1.4273 2.4931 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 1.8934 -0.5137 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 2.2549 1.4904 -2.1270 25 1 3.0698 3.7930 -2.1553 26 1 5.0819 7.3590 -1.9451 27 1 2.6691 0.9230 2.8995 28 1 1.4389 2.1725 3.2057 29 1 1.0045 0.6963 2.3110 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575702608.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:06 Heat of formation + Delta-G solvation = -68.177952 kcal Electronic energy + Delta-G solvation = -13500.944417 eV Core-core repulsion = 11108.544975 eV Total energy + Delta-G solvation = -2392.399443 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.30915 -39.96771 -36.33986 -34.44976 -32.85014 -31.07867 -27.89261 -26.98816 -23.73256 -22.52950 -21.74325 -19.07953 -17.87084 -17.53620 -16.69274 -16.21808 -15.57992 -15.21391 -14.84894 -14.52135 -14.37466 -13.97004 -13.74933 -13.34612 -13.20382 -12.97681 -12.64543 -12.50191 -12.32891 -11.81148 -11.75192 -11.56119 -11.43344 -10.93243 -9.37120 -9.27273 -8.97224 -6.55932 0.61703 0.65323 1.22039 1.36734 1.45851 2.07913 2.47914 3.27530 3.83543 4.07218 4.14984 4.39095 4.45656 4.54599 4.69974 4.79783 4.83829 4.88006 4.98807 5.06853 5.17493 5.23902 5.30372 5.53216 5.60429 5.62715 5.82017 5.97340 6.06777 6.29803 6.61140 6.71547 8.11943 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.038078 B = 0.011984 C = 0.009882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.159579 B = 2335.895437 C = 2832.663723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.063 4.063 3 C -0.169 4.169 4 C -0.080 4.080 5 C -0.228 4.228 6 C 0.043 3.957 7 C -0.486 4.486 8 H 0.047 0.953 9 C 0.047 3.953 10 N -0.846 5.846 11 Si 0.969 3.031 12 H -0.247 1.247 13 H -0.273 1.273 14 H -0.253 1.253 15 C -0.046 4.046 16 F -0.168 7.168 17 C -0.082 4.082 18 C -0.107 4.107 19 H 0.047 0.953 20 H 0.046 0.954 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.137 0.863 25 H 0.107 0.893 26 H 0.297 0.703 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 -13.559 -0.738 13.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 C -0.170 4.170 4 C -0.098 4.098 5 C -0.247 4.247 6 C 0.040 3.960 7 C -0.515 4.515 8 H 0.065 0.935 9 C -0.168 4.168 10 N -0.471 5.471 11 Si 0.791 3.209 12 H -0.171 1.171 13 H -0.200 1.200 14 H -0.177 1.177 15 C -0.066 4.066 16 F -0.147 7.147 17 C -0.083 4.083 18 C -0.163 4.163 19 H 0.067 0.933 20 H 0.065 0.935 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.155 0.845 25 H 0.125 0.875 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.232 -13.259 -0.786 13.670 hybrid contribution 0.537 0.989 0.008 1.125 sum -2.695 -12.270 -0.777 12.586 Atomic orbital electron populations 1.21770 0.94750 1.02065 1.01521 1.20337 0.96107 0.90563 1.02982 1.19501 1.08456 0.98211 0.90864 1.20730 0.97078 0.93713 0.98305 1.20749 1.10813 0.97389 0.95764 1.17905 0.93380 0.93155 0.91567 1.19305 1.26069 0.95144 1.10968 0.93510 1.26899 0.96137 0.97824 0.95907 1.69719 1.31049 1.17784 1.28598 0.85440 0.77246 0.79055 0.79159 1.17119 1.19973 1.17721 1.18053 1.15666 0.92386 0.80513 1.91238 1.94980 1.81487 1.47012 1.19793 0.99178 0.91576 0.97707 1.20767 1.02525 1.00303 0.92711 0.93349 0.93462 0.90627 0.90590 0.90477 0.84521 0.87484 0.89258 0.90460 0.92856 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.69 71.98 0.70 -2.53 15 2 C -0.06 -1.61 5.36 29.85 0.16 -1.45 15 3 C -0.17 -6.14 5.15 -19.69 -0.10 -6.25 15 4 C -0.08 -3.13 9.59 21.99 0.21 -2.91 15 5 C -0.23 -10.72 7.13 22.48 0.16 -10.56 15 6 C 0.04 2.31 5.11 -21.25 -0.11 2.21 15 7 C -0.49 -28.99 9.26 23.44 0.22 -28.77 15 8 H 0.05 3.09 7.98 -2.91 -0.02 3.06 15 9 C 0.05 2.61 5.40 85.25 0.46 3.07 15 10 N -0.85 -47.60 13.93 21.83 0.30 -47.30 15 11 Si 0.97 42.92 24.52 68.60 1.68 44.61 15 12 H -0.25 -9.95 6.71 99.48 0.67 -9.28 15 13 H -0.27 -11.29 7.11 99.48 0.71 -10.58 15 14 H -0.25 -11.50 6.86 99.48 0.68 -10.82 15 15 C -0.05 -2.34 7.25 22.89 0.17 -2.17 15 16 F -0.17 -8.82 16.00 44.97 0.72 -8.10 15 17 C -0.08 -3.33 5.88 -19.86 -0.12 -3.45 15 18 C -0.11 -3.36 9.02 71.23 0.64 -2.72 15 19 H 0.05 1.14 6.87 -2.39 -0.02 1.12 15 20 H 0.05 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.07 1.28 8.14 -2.39 -0.02 1.26 15 22 H 0.08 1.74 6.98 -2.39 -0.02 1.73 15 23 H 0.08 1.73 8.05 -2.39 -0.02 1.71 15 24 H 0.14 4.28 8.06 -2.91 -0.02 4.25 15 25 H 0.11 4.93 4.73 -2.91 -0.01 4.92 15 26 H 0.30 14.81 8.30 -92.71 -0.77 14.04 15 27 H 0.08 2.20 8.14 -2.39 -0.02 2.18 15 28 H 0.05 1.74 7.65 -2.39 -0.02 1.72 15 29 H 0.09 2.39 5.37 -2.38 -0.01 2.38 15 Total: -1.00 -63.70 242.38 6.18 -57.52 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.09 Total: 8.80 kcal Atomic # 6 Polarization: -57.92 SS G_CDS: 2.39 Total: -55.53 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.30 Total: -47.30 kcal Atomic # 9 Polarization: -8.82 SS G_CDS: 0.72 Total: -8.10 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.68 Total: 44.61 kcal Total: -63.70 6.18 -57.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575702608.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.662 kcal (2) G-P(sol) polarization free energy of solvation -63.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds