Wall clock time and date at job start Mon Mar 30 2020 02:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35716 * 117.00099 * 2 1 4 4 C 1.37868 * 120.11391 * 0.02562 * 3 2 1 5 5 C 1.39435 * 120.29789 * 180.02562 * 4 3 2 6 6 N 1.38989 * 119.74561 * 180.02562 * 5 4 3 7 7 C 1.39271 * 120.51291 * 359.97438 * 5 4 3 8 8 C 1.38158 * 120.21549 * 359.97438 * 7 5 4 9 9 N 1.38961 * 120.14790 * 180.02562 * 8 7 5 10 10 C 1.41375 * 120.11015 * 180.02562 * 3 2 1 11 11 C 1.40790 * 120.25477 * 0.25556 * 10 3 2 12 12 H 1.08001 * 120.00012 * 141.12316 * 11 10 3 13 13 C 1.39800 * 120.00088 * 321.12470 * 11 10 3 14 14 N 1.31033 * 119.99948 * 337.84733 * 13 11 10 15 15 Si 1.86793 * 120.00245 * 157.84623 * 13 11 10 16 16 H 1.48502 * 109.47364 * 60.00144 * 15 13 11 17 17 H 1.48505 * 109.47210 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47330 * 299.99809 * 15 13 11 19 19 H 1.09004 * 109.46835 * 299.99155 * 1 2 3 20 20 H 1.09000 * 109.47395 * 59.99212 * 1 2 3 21 21 H 1.09002 * 109.47508 * 179.97438 * 1 2 3 22 22 H 1.07998 * 119.85523 * 0.04339 * 4 3 2 23 23 H 0.96999 * 119.99920 * 179.97438 * 6 5 4 24 24 H 0.96999 * 120.00120 * 359.97438 * 6 5 4 25 25 H 1.07997 * 119.89008 * 179.97438 * 7 5 4 26 26 H 0.96994 * 120.00206 * 184.03476 * 9 8 7 27 27 H 0.97006 * 120.00213 * 4.03946 * 9 8 7 28 28 H 0.96998 * 119.99777 * 176.12731 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2966 2.3670 0.0005 5 6 1.9256 3.6114 0.0000 6 7 1.1598 4.7712 0.0011 7 6 3.3154 3.7012 -0.0005 8 6 4.0862 2.5546 0.0000 9 7 5.4729 2.6458 0.0000 10 6 3.4568 1.2859 -0.0005 11 6 4.2311 0.1101 -0.0065 12 1 5.1358 0.0622 -0.5944 13 6 3.8288 -0.9956 0.7485 14 7 3.0227 -0.8340 1.7688 15 14 4.4403 -2.7034 0.3027 16 1 5.9228 -2.7349 0.3825 17 1 3.8720 -3.6957 1.2502 18 1 4.0117 -3.0377 -1.0793 19 1 -0.3633 0.5137 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 0.2181 2.3099 0.0017 23 1 1.5935 5.6388 0.0011 24 1 0.1915 4.7131 0.0018 25 1 3.7922 4.6702 -0.0014 26 1 6.0118 1.8415 -0.0588 27 1 5.9019 3.5138 0.0588 28 1 2.6989 -1.6064 2.2581 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575722171.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:04 Heat of formation + Delta-G solvation = -10.365170 kcal Electronic energy + Delta-G solvation = -13758.514259 eV Core-core repulsion = 11388.541729 eV Total energy + Delta-G solvation = -2369.972531 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.54567 -36.42272 -34.54118 -32.77803 -31.03507 -28.36805 -27.14903 -26.22212 -23.84593 -20.76612 -20.13238 -17.13814 -16.75145 -16.32651 -15.12809 -14.67750 -14.23582 -14.17480 -13.87722 -13.72878 -12.91113 -12.03960 -11.82795 -11.74669 -11.00513 -10.95277 -10.58414 -10.39861 -10.32356 -10.13170 -9.81151 -9.37885 -8.54740 -7.71225 -6.42252 -6.35116 -6.01106 -3.69687 3.13787 3.21493 3.33551 3.36849 3.46032 4.36709 4.69560 4.96331 5.05806 5.42059 5.78732 6.04862 6.12828 6.24994 6.40501 6.55799 6.90653 7.14409 7.28104 7.52814 7.63125 7.78279 8.10003 8.50562 8.58075 8.73688 8.87948 8.99966 9.14391 9.39649 9.49389 10.78567 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.033670 B = 0.013799 C = 0.010317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.394719 B = 2028.641257 C = 2713.438629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.275 6.275 3 C 0.141 3.859 4 C -0.306 4.306 5 C 0.188 3.812 6 N -0.892 5.892 7 C -0.282 4.282 8 C 0.195 3.805 9 N -0.876 5.876 10 C 0.004 3.996 11 C -0.482 4.482 12 H 0.063 0.937 13 C 0.094 3.906 14 N -0.797 5.797 15 Si 0.886 3.114 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.271 1.271 19 H 0.037 0.963 20 H 0.033 0.967 21 H 0.074 0.926 22 H 0.094 0.906 23 H 0.383 0.617 24 H 0.383 0.617 25 H 0.089 0.911 26 H 0.395 0.605 27 H 0.378 0.622 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 4.274 -2.173 5.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.186 6.186 3 C 0.093 3.907 4 C -0.330 4.330 5 C 0.087 3.913 6 N -0.433 5.433 7 C -0.309 4.309 8 C 0.091 3.909 9 N -0.416 5.416 10 C -0.002 4.002 11 C -0.514 4.514 12 H 0.081 0.919 13 C -0.121 4.121 14 N -0.425 5.425 15 Si 0.713 3.287 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.196 1.196 19 H 0.056 0.944 20 H 0.051 0.949 21 H 0.093 0.907 22 H 0.112 0.888 23 H 0.209 0.791 24 H 0.209 0.791 25 H 0.107 0.893 26 H 0.224 0.776 27 H 0.203 0.797 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.343 3.858 -1.949 4.917 hybrid contribution -0.029 -0.343 -0.048 0.348 sum -2.372 3.515 -1.997 4.687 Atomic orbital electron populations 1.22683 0.83138 1.01109 0.99304 1.86237 1.16771 1.27394 1.88205 1.18611 0.91531 0.82045 0.98501 1.19989 0.97263 0.91557 1.24195 1.16743 0.89664 0.85516 0.99351 1.41950 1.07223 1.05315 1.88842 1.19356 0.91532 0.95643 1.24373 1.17317 0.83332 0.92417 0.97811 1.41938 1.03843 1.09262 1.86553 1.16180 0.88533 0.91094 1.04401 1.18466 1.09556 0.97117 1.26305 0.91912 1.25345 0.94468 0.99425 0.92851 1.69842 1.27772 1.31472 1.13376 0.86761 0.79082 0.83746 0.79139 1.20062 1.21197 1.19648 0.94399 0.94864 0.90710 0.88829 0.79108 0.79123 0.89323 0.77582 0.79682 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.81 101.05 0.99 1.68 15 2 O -0.27 -7.07 7.44 -18.85 -0.14 -7.21 15 3 C 0.14 3.74 6.18 -38.52 -0.24 3.50 15 4 C -0.31 -7.21 8.85 -39.27 -0.35 -7.56 15 5 C 0.19 4.14 6.75 -83.79 -0.57 3.58 15 6 N -0.89 -15.11 9.05 32.45 0.29 -14.82 15 7 C -0.28 -6.34 9.69 -39.23 -0.38 -6.72 15 8 C 0.20 4.75 6.77 -83.37 -0.56 4.18 15 9 N -0.88 -17.86 8.98 32.67 0.29 -17.57 15 10 C 0.00 0.12 5.38 -106.45 -0.57 -0.45 15 11 C -0.48 -13.32 8.02 -38.03 -0.31 -13.62 15 12 H 0.06 1.66 7.19 -52.49 -0.38 1.29 15 13 C 0.09 2.55 4.32 -17.31 -0.07 2.48 15 14 N -0.80 -22.36 11.40 55.54 0.63 -21.73 15 15 Si 0.89 20.53 29.62 -169.99 -5.03 15.50 15 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 17 H -0.29 -6.54 7.11 56.52 0.40 -6.13 15 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 19 H 0.04 0.73 7.66 -51.93 -0.40 0.33 15 20 H 0.03 0.60 7.66 -51.93 -0.40 0.20 15 21 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 22 H 0.09 2.00 6.26 -52.49 -0.33 1.67 15 23 H 0.38 5.57 8.82 -40.82 -0.36 5.21 15 24 H 0.38 5.68 8.83 -40.82 -0.36 5.32 15 25 H 0.09 1.77 8.06 -52.49 -0.42 1.35 15 26 H 0.40 8.02 7.29 -40.82 -0.30 7.72 15 27 H 0.38 6.40 8.84 -40.82 -0.36 6.03 15 28 H 0.27 7.09 8.30 -40.82 -0.34 6.75 15 LS Contribution 240.61 15.07 3.63 3.63 Total: -1.00 -31.02 240.61 -5.24 -36.27 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -2.86 Total: 18.88 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -2.06 Total: -12.94 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 1.22 Total: -54.12 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.14 Total: -7.21 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.02 -5.24 -36.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575722171.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.900 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds