Wall clock time and date at job start Mon Mar 30 2020 02:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35716 * 117.00099 * 2 1 4 4 C 1.37868 * 120.11391 * 0.02562 * 3 2 1 5 5 C 1.39435 * 120.29789 * 180.02562 * 4 3 2 6 6 N 1.38989 * 119.74561 * 180.02562 * 5 4 3 7 7 C 1.39271 * 120.51291 * 359.97438 * 5 4 3 8 8 C 1.38158 * 120.21549 * 359.97438 * 7 5 4 9 9 N 1.38961 * 120.14790 * 180.02562 * 8 7 5 10 10 C 1.41375 * 120.11015 * 180.02562 * 3 2 1 11 11 C 1.40790 * 120.25477 * 0.25556 * 10 3 2 12 12 H 1.08001 * 120.00012 * 141.12316 * 11 10 3 13 13 C 1.39800 * 120.00088 * 321.12470 * 11 10 3 14 14 N 1.31033 * 119.99948 * 337.84733 * 13 11 10 15 15 Si 1.86793 * 120.00245 * 157.84623 * 13 11 10 16 16 H 1.48502 * 109.47364 * 60.00144 * 15 13 11 17 17 H 1.48505 * 109.47210 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47330 * 299.99809 * 15 13 11 19 19 H 1.09004 * 109.46835 * 299.99155 * 1 2 3 20 20 H 1.09000 * 109.47395 * 59.99212 * 1 2 3 21 21 H 1.09002 * 109.47508 * 179.97438 * 1 2 3 22 22 H 1.07998 * 119.85523 * 0.04339 * 4 3 2 23 23 H 0.96999 * 119.99920 * 179.97438 * 6 5 4 24 24 H 0.96999 * 120.00120 * 359.97438 * 6 5 4 25 25 H 1.07997 * 119.89008 * 179.97438 * 7 5 4 26 26 H 0.96994 * 120.00206 * 184.03476 * 9 8 7 27 27 H 0.97006 * 120.00213 * 4.03946 * 9 8 7 28 28 H 0.96998 * 119.99777 * 176.12731 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2966 2.3670 0.0005 5 6 1.9256 3.6114 0.0000 6 7 1.1598 4.7712 0.0011 7 6 3.3154 3.7012 -0.0005 8 6 4.0862 2.5546 0.0000 9 7 5.4729 2.6458 0.0000 10 6 3.4568 1.2859 -0.0005 11 6 4.2311 0.1101 -0.0065 12 1 5.1358 0.0622 -0.5944 13 6 3.8288 -0.9956 0.7485 14 7 3.0227 -0.8340 1.7688 15 14 4.4403 -2.7034 0.3027 16 1 5.9228 -2.7349 0.3825 17 1 3.8720 -3.6957 1.2502 18 1 4.0117 -3.0377 -1.0793 19 1 -0.3633 0.5137 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 0.2181 2.3099 0.0017 23 1 1.5935 5.6388 0.0011 24 1 0.1915 4.7131 0.0018 25 1 3.7922 4.6702 -0.0014 26 1 6.0118 1.8415 -0.0588 27 1 5.9019 3.5138 0.0588 28 1 2.6989 -1.6064 2.2581 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575722171.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:04 Heat of formation + Delta-G solvation = -33.751615 kcal Electronic energy + Delta-G solvation = -13759.528372 eV Core-core repulsion = 11388.541729 eV Total energy + Delta-G solvation = -2370.986643 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.33850 -38.19290 -36.24441 -34.66444 -32.74969 -30.16070 -28.92234 -27.88571 -25.70230 -22.56912 -21.91222 -19.03867 -18.46984 -18.01918 -16.78940 -16.51579 -15.95924 -15.84160 -15.66093 -15.43674 -14.66108 -13.80424 -13.63394 -13.48864 -12.82822 -12.75983 -12.37906 -12.14582 -12.01480 -11.84057 -11.58968 -11.23282 -10.49991 -9.39441 -8.34565 -8.11669 -7.85141 -5.67414 1.30822 1.37642 1.47238 1.54826 1.63296 2.47308 3.02146 3.15255 3.44936 3.79451 3.89129 4.52753 4.57319 4.61718 4.79656 4.84390 5.17297 5.34907 5.56874 5.64683 5.81732 6.02183 6.24546 6.64934 6.89560 7.04459 7.17882 7.33839 7.42098 7.61159 7.65031 8.84987 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.033670 B = 0.013799 C = 0.010317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.394719 B = 2028.641257 C = 2713.438629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.305 6.305 3 C 0.129 3.871 4 C -0.329 4.329 5 C 0.207 3.793 6 N -0.872 5.872 7 C -0.300 4.300 8 C 0.195 3.805 9 N -0.864 5.864 10 C -0.054 4.054 11 C -0.506 4.506 12 H 0.058 0.942 13 C 0.053 3.947 14 N -0.834 5.834 15 Si 0.947 3.053 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.276 1.276 19 H 0.040 0.960 20 H 0.050 0.950 21 H 0.096 0.904 22 H 0.112 0.888 23 H 0.399 0.601 24 H 0.397 0.603 25 H 0.117 0.883 26 H 0.395 0.605 27 H 0.396 0.604 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.746 5.452 -2.540 6.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.217 6.217 3 C 0.081 3.919 4 C -0.354 4.354 5 C 0.103 3.897 6 N -0.414 5.414 7 C -0.327 4.327 8 C 0.090 3.910 9 N -0.405 5.405 10 C -0.061 4.061 11 C -0.539 4.539 12 H 0.076 0.924 13 C -0.158 4.158 14 N -0.464 5.464 15 Si 0.772 3.228 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.201 1.201 19 H 0.058 0.942 20 H 0.069 0.931 21 H 0.114 0.886 22 H 0.130 0.870 23 H 0.228 0.772 24 H 0.225 0.775 25 H 0.135 0.865 26 H 0.224 0.776 27 H 0.224 0.776 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.743 5.096 -2.323 6.236 hybrid contribution 0.018 -0.491 0.020 0.492 sum -2.725 4.605 -2.302 5.825 Atomic orbital electron populations 1.22925 0.80701 1.02904 1.00158 1.86168 1.19481 1.27802 1.88222 1.18930 0.91864 0.83035 0.98102 1.20189 0.98215 0.91493 1.25473 1.16950 0.90070 0.86517 0.96146 1.41858 1.07886 1.04610 1.87055 1.19649 0.91913 0.96281 1.24872 1.17612 0.84815 0.92310 0.96292 1.41882 1.02733 1.10369 1.85512 1.16587 0.89552 0.92189 1.07765 1.18634 1.10024 0.98412 1.26816 0.92404 1.25972 0.94804 1.02436 0.92552 1.69919 1.29888 1.32003 1.14559 0.85810 0.78906 0.79729 0.78338 1.19149 1.20760 1.20117 0.94163 0.93135 0.88596 0.87001 0.77234 0.77512 0.86531 0.77619 0.77580 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 9.81 113.37 1.11 2.24 15 2 O -0.30 -15.82 7.44 -90.38 -0.67 -16.49 15 3 C 0.13 6.85 6.18 22.95 0.14 6.99 15 4 C -0.33 -15.11 8.85 22.47 0.20 -14.91 15 5 C 0.21 8.60 6.75 38.54 0.26 8.86 15 6 N -0.87 -26.29 9.05 -51.25 -0.46 -26.76 15 7 C -0.30 -12.82 9.69 22.50 0.22 -12.61 15 8 C 0.20 9.37 6.77 38.83 0.26 9.63 15 9 N -0.86 -34.45 8.98 -50.56 -0.45 -34.91 15 10 C -0.05 -3.00 5.38 -21.05 -0.11 -3.12 15 11 C -0.51 -28.54 8.02 23.27 0.19 -28.36 15 12 H 0.06 3.15 7.19 -2.91 -0.02 3.13 15 13 C 0.05 2.95 4.32 85.19 0.37 3.32 15 14 N -0.83 -47.85 11.40 21.81 0.25 -47.60 15 15 Si 0.95 42.99 29.62 68.60 2.03 45.02 15 16 H -0.27 -11.55 7.11 99.48 0.71 -10.85 15 17 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 18 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 19 H 0.04 1.52 7.66 -2.38 -0.02 1.50 15 20 H 0.05 1.76 7.66 -2.39 -0.02 1.74 15 21 H 0.10 3.24 8.14 -2.39 -0.02 3.22 15 22 H 0.11 4.57 6.26 -2.91 -0.02 4.55 15 23 H 0.40 9.91 8.82 -92.71 -0.82 9.10 15 24 H 0.40 10.24 8.83 -92.71 -0.82 9.42 15 25 H 0.12 4.24 8.06 -2.91 -0.02 4.22 15 26 H 0.40 15.97 7.29 -92.71 -0.68 15.29 15 27 H 0.40 12.65 8.84 -92.70 -0.82 11.84 15 28 H 0.27 14.45 8.30 -92.71 -0.77 13.68 15 Total: -1.00 -66.82 240.61 1.43 -65.40 By element: Atomic # 1 Polarization: 45.18 SS G_CDS: -1.90 Total: 43.28 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 2.64 Total: -27.94 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -0.67 Total: -109.27 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.67 Total: -16.49 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -66.82 1.43 -65.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575722171.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.645 kcal (2) G-P(sol) polarization free energy of solvation -66.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds