Wall clock time and date at job start Mon Mar 30 2020 02:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36004 * 117.00114 * 2 1 4 4 C 1.38412 * 119.93533 * 359.72373 * 3 2 1 5 5 C 1.39563 * 120.50145 * 179.76909 * 4 3 2 6 6 N 1.39822 * 119.81831 * 180.28395 * 5 4 3 7 7 C 1.38018 * 120.36608 * 0.50691 * 5 4 3 8 8 C 1.40711 * 119.85769 * 359.75111 * 7 5 4 9 9 C 1.41051 * 120.24460 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00251 * 153.59834 * 9 8 7 11 11 C 1.39872 * 119.99988 * 333.60420 * 9 8 7 12 12 N 1.30904 * 120.00143 * 343.95793 * 11 9 8 13 13 Si 1.86798 * 120.00007 * 163.96295 * 11 9 8 14 14 H 1.48502 * 109.47082 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47006 * 119.99811 * 13 11 9 16 16 H 1.48500 * 109.47408 * 239.99399 * 13 11 9 17 17 C 1.39207 * 119.93761 * 180.02562 * 3 2 1 18 18 N 1.39091 * 120.17967 * 359.97438 * 17 3 2 19 19 H 1.08991 * 109.46947 * 60.00268 * 1 2 3 20 20 H 1.08999 * 109.46587 * 300.00182 * 1 2 3 21 21 H 1.08996 * 109.46702 * 180.02562 * 1 2 3 22 22 H 1.08000 * 119.74990 * 0.02562 * 4 3 2 23 23 H 0.97001 * 120.00040 * 180.23245 * 6 5 4 24 24 H 0.97005 * 120.00103 * 0.21957 * 6 5 4 25 25 H 1.08000 * 120.07389 * 179.77003 * 7 5 4 26 26 H 0.96998 * 120.00426 * 180.02562 * 12 11 9 27 27 H 0.96999 * 119.99765 * 359.97438 * 18 17 3 28 28 H 0.96999 * 120.00056 * 180.02562 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.2914 2.3718 -0.0058 5 6 1.9127 3.6215 -0.0010 6 7 1.1360 4.7841 -0.0009 7 6 3.2896 3.7161 -0.0010 8 6 4.0722 2.5467 -0.0005 9 6 5.4800 2.6339 0.0001 10 1 6.0707 1.8312 0.4164 11 6 6.1112 3.7601 -0.5383 12 7 5.4434 4.5767 -1.3135 13 14 7.9070 4.0987 -0.1513 14 1 8.4303 3.0337 0.7416 15 1 8.6903 4.1170 -1.4128 16 1 8.0279 5.4151 0.5254 17 6 3.4368 1.2831 -0.0005 18 7 4.1967 0.1181 -0.0005 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3632 0.5139 0.8900 21 1 -0.3632 -1.0276 0.0005 22 1 0.2132 2.3093 -0.0099 23 1 1.5650 5.6541 -0.0010 24 1 0.1680 4.7207 -0.0010 25 1 3.7655 4.6857 -0.0010 26 1 5.8812 5.3574 -1.6872 27 1 3.7580 -0.7470 0.0002 28 1 5.1653 0.1708 -0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575722661.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:14 Heat of formation + Delta-G solvation = -18.746294 kcal Electronic energy + Delta-G solvation = -13502.529450 eV Core-core repulsion = 11132.193486 eV Total energy + Delta-G solvation = -2370.335963 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.71910 -36.50651 -34.40057 -33.18143 -30.73861 -28.93260 -27.00688 -25.76977 -24.47102 -20.87392 -20.01840 -17.60149 -16.50754 -15.84930 -15.31221 -14.90740 -14.73648 -14.40758 -14.23823 -13.42932 -12.77536 -12.03848 -11.88512 -11.82866 -11.26757 -11.00642 -10.57971 -10.53919 -10.37470 -10.04679 -9.78167 -9.56407 -9.00982 -7.71193 -7.02052 -6.63621 -5.42146 -4.09436 2.88322 3.14296 3.19153 3.29669 3.48175 4.02113 4.38352 4.78874 5.09630 5.56931 5.74614 5.75361 5.89874 5.95946 6.47484 6.87606 7.02118 7.23054 7.35727 7.52548 7.73967 7.90995 8.08598 8.35868 8.58926 8.84507 8.88409 8.97843 9.08345 9.36487 9.40420 10.35499 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.037993 B = 0.011029 C = 0.008772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.800962 B = 2538.104828 C = 3191.276423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.334 6.334 3 C 0.082 3.918 4 C -0.334 4.334 5 C 0.204 3.796 6 N -0.895 5.895 7 C -0.227 4.227 8 C 0.119 3.881 9 C -0.459 4.459 10 H 0.075 0.925 11 C 0.077 3.923 12 N -0.797 5.797 13 Si 0.904 3.096 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.275 1.275 17 C 0.062 3.938 18 N -0.885 5.885 19 H 0.042 0.958 20 H 0.042 0.958 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.386 0.614 24 H 0.378 0.622 25 H 0.119 0.881 26 H 0.275 0.725 27 H 0.379 0.621 28 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 -1.958 1.642 4.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.248 6.248 3 C 0.034 3.966 4 C -0.358 4.358 5 C 0.103 3.897 6 N -0.437 5.437 7 C -0.252 4.252 8 C 0.113 3.887 9 C -0.490 4.490 10 H 0.093 0.907 11 C -0.140 4.140 12 N -0.423 5.423 13 Si 0.729 3.271 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.200 1.200 17 C -0.039 4.039 18 N -0.429 5.429 19 H 0.060 0.940 20 H 0.060 0.940 21 H 0.097 0.903 22 H 0.110 0.890 23 H 0.213 0.787 24 H 0.204 0.796 25 H 0.136 0.864 26 H 0.086 0.914 27 H 0.205 0.795 28 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.075 -1.919 1.496 4.746 hybrid contribution 0.430 0.485 0.004 0.648 sum -3.646 -1.434 1.500 4.195 Atomic orbital electron populations 1.22652 0.81015 1.01328 1.00354 1.85851 1.19234 1.28841 1.90905 1.17824 0.89937 0.82701 1.06145 1.19608 0.96598 0.90975 1.28665 1.17266 0.90850 0.85128 0.96489 1.42248 1.06867 1.05728 1.88820 1.20445 0.89457 0.99030 1.16235 1.16797 0.93012 0.87956 0.90898 1.19158 0.91310 1.03198 1.35335 0.90737 1.25778 1.00006 0.95310 0.92880 1.69905 1.37968 1.11767 1.22659 0.86336 0.82609 0.79143 0.78972 1.18596 1.20279 1.19996 1.17167 0.86140 0.87972 1.12578 1.41571 1.07334 1.04381 1.89659 0.93956 0.93987 0.90298 0.88990 0.78748 0.79632 0.86355 0.91422 0.79546 0.78464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 9.81 101.05 0.99 1.68 15 2 O -0.33 -7.09 9.72 -19.75 -0.19 -7.28 15 3 C 0.08 1.99 6.69 -39.16 -0.26 1.73 15 4 C -0.33 -7.80 8.88 -39.02 -0.35 -8.15 15 5 C 0.20 4.87 6.74 -83.80 -0.56 4.31 15 6 N -0.90 -17.17 9.09 32.40 0.29 -16.87 15 7 C -0.23 -6.01 8.49 -38.73 -0.33 -6.34 15 8 C 0.12 3.23 5.57 -106.68 -0.59 2.64 15 9 C -0.46 -12.18 8.47 -37.90 -0.32 -12.50 15 10 H 0.07 1.88 6.71 -52.48 -0.35 1.53 15 11 C 0.08 1.95 5.16 -17.34 -0.09 1.86 15 12 N -0.80 -20.92 10.97 55.54 0.61 -20.31 15 13 Si 0.90 18.92 29.59 -169.99 -5.03 13.89 15 14 H -0.26 -5.41 7.11 56.52 0.40 -5.01 15 15 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 17 C 0.06 1.59 6.81 -82.99 -0.56 1.03 15 18 N -0.88 -19.55 8.98 32.86 0.30 -19.26 15 19 H 0.04 0.67 7.64 -51.93 -0.40 0.27 15 20 H 0.04 0.65 7.66 -51.93 -0.40 0.26 15 21 H 0.08 1.02 8.14 -51.93 -0.42 0.59 15 22 H 0.09 1.91 6.25 -52.49 -0.33 1.58 15 23 H 0.39 6.88 8.83 -40.82 -0.36 6.52 15 24 H 0.38 6.18 8.84 -40.82 -0.36 5.82 15 25 H 0.12 3.23 6.23 -52.49 -0.33 2.90 15 26 H 0.28 6.60 8.30 -40.82 -0.34 6.26 15 27 H 0.38 7.57 8.17 -40.82 -0.33 7.24 15 28 H 0.39 8.20 7.06 -40.82 -0.29 7.92 15 LS Contribution 240.13 15.07 3.62 3.62 Total: -1.00 -29.52 240.13 -5.19 -34.70 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -2.70 Total: 25.25 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -2.08 Total: -13.75 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 1.20 Total: -56.44 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.19 Total: -7.28 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.52 -5.19 -34.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575722661.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.957 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds