Wall clock time and date at job start Mon Mar 30 2020 02:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36004 * 117.00114 * 2 1 4 4 C 1.38412 * 119.93533 * 359.72373 * 3 2 1 5 5 C 1.39563 * 120.50145 * 179.76909 * 4 3 2 6 6 N 1.39822 * 119.81831 * 180.28395 * 5 4 3 7 7 C 1.38018 * 120.36608 * 0.50691 * 5 4 3 8 8 C 1.40711 * 119.85769 * 359.75111 * 7 5 4 9 9 C 1.41051 * 120.24460 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00251 * 153.59834 * 9 8 7 11 11 C 1.39872 * 119.99988 * 333.60420 * 9 8 7 12 12 N 1.30904 * 120.00143 * 343.95793 * 11 9 8 13 13 Si 1.86798 * 120.00007 * 163.96295 * 11 9 8 14 14 H 1.48502 * 109.47082 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47006 * 119.99811 * 13 11 9 16 16 H 1.48500 * 109.47408 * 239.99399 * 13 11 9 17 17 C 1.39207 * 119.93761 * 180.02562 * 3 2 1 18 18 N 1.39091 * 120.17967 * 359.97438 * 17 3 2 19 19 H 1.08991 * 109.46947 * 60.00268 * 1 2 3 20 20 H 1.08999 * 109.46587 * 300.00182 * 1 2 3 21 21 H 1.08996 * 109.46702 * 180.02562 * 1 2 3 22 22 H 1.08000 * 119.74990 * 0.02562 * 4 3 2 23 23 H 0.97001 * 120.00040 * 180.23245 * 6 5 4 24 24 H 0.97005 * 120.00103 * 0.21957 * 6 5 4 25 25 H 1.08000 * 120.07389 * 179.77003 * 7 5 4 26 26 H 0.96998 * 120.00426 * 180.02562 * 12 11 9 27 27 H 0.96999 * 119.99765 * 359.97438 * 18 17 3 28 28 H 0.96999 * 120.00056 * 180.02562 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.2914 2.3718 -0.0058 5 6 1.9127 3.6215 -0.0010 6 7 1.1360 4.7841 -0.0009 7 6 3.2896 3.7161 -0.0010 8 6 4.0722 2.5467 -0.0005 9 6 5.4800 2.6339 0.0001 10 1 6.0707 1.8312 0.4164 11 6 6.1112 3.7601 -0.5383 12 7 5.4434 4.5767 -1.3135 13 14 7.9070 4.0987 -0.1513 14 1 8.4303 3.0337 0.7416 15 1 8.6903 4.1170 -1.4128 16 1 8.0279 5.4151 0.5254 17 6 3.4368 1.2831 -0.0005 18 7 4.1967 0.1181 -0.0005 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3632 0.5139 0.8900 21 1 -0.3632 -1.0276 0.0005 22 1 0.2132 2.3093 -0.0099 23 1 1.5650 5.6541 -0.0010 24 1 0.1680 4.7207 -0.0010 25 1 3.7655 4.6857 -0.0010 26 1 5.8812 5.3574 -1.6872 27 1 3.7580 -0.7470 0.0002 28 1 5.1653 0.1708 -0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575722661.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:14 Heat of formation + Delta-G solvation = -40.776142 kcal Electronic energy + Delta-G solvation = -13503.484736 eV Core-core repulsion = 11132.193486 eV Total energy + Delta-G solvation = -2371.291249 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.46364 -38.23719 -36.18081 -35.03878 -32.48390 -30.78718 -28.48300 -27.62777 -26.25588 -22.70207 -21.84610 -19.40107 -18.24594 -17.63967 -17.08482 -16.70849 -16.25598 -16.12104 -15.83269 -15.12295 -14.54516 -13.77331 -13.69964 -13.48437 -12.95893 -12.70397 -12.27233 -12.16863 -12.00709 -11.90432 -11.49576 -11.40452 -10.87016 -9.44802 -8.89773 -8.52067 -7.23989 -6.04523 1.08902 1.43634 1.51466 1.57702 1.62423 2.28012 2.82448 2.89877 3.49548 3.82882 3.92570 4.51990 4.53663 4.65310 4.81266 5.08178 5.15378 5.34050 5.51450 5.70980 5.91018 6.04074 6.16653 6.55300 6.79353 6.99431 7.08271 7.10301 7.47405 7.53552 7.69766 8.49539 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.037993 B = 0.011029 C = 0.008772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.800962 B = 2538.104828 C = 3191.276423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.343 6.343 3 C 0.081 3.919 4 C -0.338 4.338 5 C 0.201 3.799 6 N -0.880 5.880 7 C -0.255 4.255 8 C 0.088 3.912 9 C -0.488 4.488 10 H 0.076 0.924 11 C 0.035 3.965 12 N -0.829 5.829 13 Si 0.979 3.021 14 H -0.258 1.258 15 H -0.271 1.271 16 H -0.270 1.270 17 C 0.034 3.966 18 N -0.877 5.877 19 H 0.047 0.953 20 H 0.049 0.951 21 H 0.116 0.884 22 H 0.120 0.880 23 H 0.393 0.607 24 H 0.395 0.605 25 H 0.101 0.899 26 H 0.281 0.719 27 H 0.389 0.611 28 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.821 -2.310 1.851 5.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.258 6.258 3 C 0.032 3.968 4 C -0.362 4.362 5 C 0.098 3.902 6 N -0.422 5.422 7 C -0.280 4.280 8 C 0.083 3.917 9 C -0.519 4.519 10 H 0.094 0.906 11 C -0.179 4.179 12 N -0.456 5.456 13 Si 0.801 3.199 14 H -0.182 1.182 15 H -0.196 1.196 16 H -0.195 1.195 17 C -0.067 4.067 18 N -0.423 5.423 19 H 0.065 0.935 20 H 0.068 0.932 21 H 0.134 0.866 22 H 0.137 0.863 23 H 0.221 0.779 24 H 0.223 0.777 25 H 0.119 0.881 26 H 0.092 0.908 27 H 0.216 0.784 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.740 -2.276 1.706 5.528 hybrid contribution 0.437 0.541 -0.068 0.699 sum -4.303 -1.735 1.637 4.920 Atomic orbital electron populations 1.23022 0.78198 1.04113 1.00905 1.85833 1.22064 1.27369 1.90541 1.17994 0.89934 0.84027 1.04865 1.19923 0.98019 0.90477 1.27825 1.17383 0.90495 0.86826 0.95513 1.42106 1.07577 1.04819 1.87730 1.20423 0.90780 0.98273 1.18490 1.17170 0.93798 0.89019 0.91750 1.19410 0.91628 1.04315 1.36532 0.90554 1.26613 1.04454 0.94635 0.92155 1.69974 1.39967 1.12332 1.23370 0.85208 0.76901 0.78967 0.78835 1.18160 1.19593 1.19461 1.17388 0.87359 0.88402 1.13597 1.41443 1.07322 1.04056 1.89464 0.93472 0.93206 0.86576 0.86255 0.77940 0.77652 0.88064 0.90838 0.78411 0.78228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.81 113.37 1.11 2.06 15 2 O -0.34 -13.91 9.72 -93.60 -0.91 -14.82 15 3 C 0.08 3.84 6.69 22.54 0.15 3.99 15 4 C -0.34 -15.28 8.88 22.63 0.20 -15.08 15 5 C 0.20 9.50 6.74 38.13 0.26 9.76 15 6 N -0.88 -32.48 9.09 -51.42 -0.47 -32.95 15 7 C -0.25 -13.76 8.49 22.82 0.19 -13.56 15 8 C 0.09 4.90 5.57 -21.20 -0.12 4.78 15 9 C -0.49 -26.45 8.47 23.36 0.20 -26.26 15 10 H 0.08 3.94 6.71 -2.91 -0.02 3.92 15 11 C 0.03 1.79 5.16 85.23 0.44 2.23 15 12 N -0.83 -44.36 10.97 21.82 0.24 -44.12 15 13 Si 0.98 39.05 29.59 68.60 2.03 41.08 15 14 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 15 H -0.27 -10.43 7.11 99.48 0.71 -9.73 15 16 H -0.27 -10.44 7.11 99.48 0.71 -9.73 15 17 C 0.03 1.75 6.81 39.01 0.27 2.01 15 18 N -0.88 -38.80 8.98 -49.97 -0.45 -39.24 15 19 H 0.05 1.34 7.64 -2.39 -0.02 1.32 15 20 H 0.05 1.39 7.66 -2.39 -0.02 1.37 15 21 H 0.12 2.53 8.14 -2.39 -0.02 2.51 15 22 H 0.12 4.61 6.25 -2.91 -0.02 4.59 15 23 H 0.39 13.63 8.83 -92.71 -0.82 12.81 15 24 H 0.40 11.95 8.84 -92.70 -0.82 11.13 15 25 H 0.10 5.70 6.23 -2.91 -0.02 5.68 15 26 H 0.28 13.67 8.30 -92.71 -0.77 12.90 15 27 H 0.39 15.32 8.17 -92.71 -0.76 14.56 15 28 H 0.39 16.66 7.06 -92.71 -0.65 16.00 15 Total: -1.00 -63.40 240.13 1.33 -62.07 By element: Atomic # 1 Polarization: 59.86 SS G_CDS: -1.81 Total: 58.05 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 2.70 Total: -30.07 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -0.68 Total: -116.31 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.91 Total: -14.82 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -63.40 1.33 -62.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575722661.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.292 kcal (2) G-P(sol) polarization free energy of solvation -63.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds