Wall clock time and date at job start Mon Mar 30 2020 02:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35811 * 117.00376 * 2 1 4 4 C 1.39785 * 119.87987 * 89.99902 * 3 2 1 5 5 N 1.39884 * 119.94183 * 0.04278 * 4 3 2 6 6 C 1.38044 * 120.12558 * 180.02562 * 4 3 2 7 7 C 1.40798 * 119.87292 * 359.97438 * 6 4 3 8 8 C 1.41185 * 120.12078 * 180.02562 * 7 6 4 9 9 H 1.07995 * 120.00252 * 208.75138 * 8 7 6 10 10 C 1.39838 * 119.99631 * 28.75264 * 8 7 6 11 11 N 1.30907 * 120.00231 * 197.91231 * 10 8 7 12 12 Si 1.86801 * 120.00080 * 17.90818 * 10 8 7 13 13 H 1.48500 * 109.47163 * 270.00053 * 12 10 8 14 14 H 1.48501 * 109.47281 * 30.00187 * 12 10 8 15 15 H 1.48506 * 109.47063 * 150.00002 * 12 10 8 16 16 C 1.40801 * 119.76331 * 0.28099 * 7 6 4 17 17 C 1.38041 * 119.87448 * 359.44098 * 16 7 6 18 18 N 1.39887 * 119.94004 * 180.27679 * 17 16 7 19 19 H 1.09001 * 109.47230 * 59.99679 * 1 2 3 20 20 H 1.09005 * 109.47240 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47380 * 299.99929 * 1 2 3 22 22 H 0.96997 * 120.00602 * 179.97438 * 5 4 3 23 23 H 0.97010 * 119.99362 * 359.97438 * 5 4 3 24 24 H 1.08001 * 120.06935 * 180.02562 * 6 4 3 25 25 H 0.97002 * 119.99481 * 355.43794 * 11 10 8 26 26 H 1.07999 * 120.05890 * 179.69909 * 16 7 6 27 27 H 0.97000 * 119.99898 * 180.27540 * 18 17 16 28 28 H 0.96999 * 119.99732 * 0.28384 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 2.3618 1.8305 1.2120 5 7 2.0433 1.2036 2.4213 6 6 2.9881 3.0607 1.2180 7 6 3.3089 3.6902 0.0001 8 6 3.9500 4.9481 0.0000 9 1 3.7944 5.6334 -0.8199 10 6 4.7865 5.3065 1.0618 11 7 5.0987 6.5632 1.2536 12 14 5.4583 3.9920 2.2064 13 1 4.5186 3.7948 3.3393 14 1 5.6094 2.7166 1.4609 15 1 6.7809 4.4196 2.7290 16 6 2.9833 3.0631 -1.2178 17 6 2.3622 1.8304 -1.2120 18 7 2.0433 1.2035 -2.4213 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 2.2626 1.6331 3.2629 23 1 1.6031 0.3391 2.4182 24 1 3.2324 3.5391 2.1549 25 1 4.8046 7.2379 0.6218 26 1 3.2228 3.5439 -2.1548 27 1 1.6033 0.3391 -2.4182 28 1 2.2624 1.6333 -3.2628 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575723022.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:17 Heat of formation + Delta-G solvation = -51.790291 kcal Electronic energy + Delta-G solvation = -13609.240351 eV Core-core repulsion = 11237.471492 eV Total energy + Delta-G solvation = -2371.768859 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.58712 -37.96118 -36.16333 -35.69572 -33.53031 -30.27827 -28.69038 -27.94666 -25.70394 -22.90676 -22.10690 -20.15501 -18.46286 -18.30187 -17.47453 -16.48298 -16.18322 -16.04990 -15.64240 -15.42921 -14.83020 -14.51454 -13.86696 -13.49682 -13.18347 -12.77713 -12.43610 -12.18797 -12.04682 -11.71493 -11.38912 -11.06941 -10.56593 -10.23161 -9.32089 -8.46042 -8.00776 -6.56093 0.86609 1.20712 1.40849 1.60852 1.85076 2.23652 2.59613 3.03333 3.25725 3.43888 3.67804 4.50990 4.66312 4.72090 4.78353 4.86801 4.99192 5.25115 5.35346 5.50781 5.70381 5.79468 5.91965 6.36393 6.53706 6.58350 6.71577 6.89322 7.20932 7.23471 7.28380 8.03348 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.040647 B = 0.011934 C = 0.009936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.699446 B = 2345.750991 C = 2817.244568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.322 6.322 3 C -0.166 4.166 4 C 0.270 3.730 5 N -0.866 5.866 6 C -0.362 4.362 7 C 0.143 3.857 8 C -0.545 4.545 9 H 0.046 0.954 10 C 0.013 3.987 11 N -0.846 5.846 12 Si 1.117 2.883 13 H -0.258 1.258 14 H -0.268 1.268 15 H -0.287 1.287 16 C -0.339 4.339 17 C 0.266 3.734 18 N -0.865 5.865 19 H 0.032 0.968 20 H 0.109 0.891 21 H 0.032 0.968 22 H 0.400 0.600 23 H 0.403 0.597 24 H 0.105 0.895 25 H 0.277 0.723 26 H 0.093 0.907 27 H 0.401 0.599 28 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.487 -11.529 0.000 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C -0.218 4.218 4 C 0.163 3.837 5 N -0.407 5.407 6 C -0.387 4.387 7 C 0.139 3.861 8 C -0.575 4.575 9 H 0.065 0.935 10 C -0.200 4.200 11 N -0.470 5.470 12 Si 0.939 3.061 13 H -0.184 1.184 14 H -0.193 1.193 15 H -0.214 1.214 16 C -0.365 4.365 17 C 0.159 3.841 18 N -0.406 5.406 19 H 0.050 0.950 20 H 0.127 0.873 21 H 0.051 0.949 22 H 0.229 0.771 23 H 0.232 0.768 24 H 0.123 0.877 25 H 0.087 0.913 26 H 0.111 0.889 27 H 0.230 0.770 28 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.486 -11.779 1.320 13.061 hybrid contribution -1.299 1.031 -1.789 2.440 sum -6.785 -10.748 -0.469 12.719 Atomic orbital electron populations 1.23185 0.82027 1.03006 0.99693 1.86107 1.18873 1.24781 1.94091 1.17191 1.20407 0.94567 0.89603 1.17581 0.90158 0.89678 0.86289 1.42246 1.69510 1.24565 1.04336 1.20353 1.21189 0.99780 0.97358 1.17395 0.86752 0.90533 0.91424 1.20549 1.27641 1.01751 1.07548 0.93538 1.28305 0.92914 1.00436 0.98319 1.70649 1.41042 1.01704 1.33644 0.83019 0.75443 0.72678 0.74948 1.18390 1.19337 1.21410 1.20231 1.21042 0.98249 0.96999 1.17601 0.90177 0.90022 0.86255 1.42210 1.69543 1.24544 1.04297 0.94957 0.87300 0.94880 0.77074 0.76784 0.87714 0.91266 0.88855 0.77001 0.77057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.13 113.37 1.26 1.69 15 2 O -0.32 -11.08 8.86 -91.43 -0.81 -11.89 15 3 C -0.17 -6.84 5.79 23.02 0.13 -6.71 15 4 C 0.27 11.48 6.76 38.18 0.26 11.74 15 5 N -0.87 -28.37 9.08 -51.22 -0.47 -28.83 15 6 C -0.36 -17.63 7.10 22.85 0.16 -17.47 15 7 C 0.14 7.64 5.14 -21.30 -0.11 7.53 15 8 C -0.54 -31.37 9.42 23.38 0.22 -31.15 15 9 H 0.05 2.82 8.06 -2.91 -0.02 2.80 15 10 C 0.01 0.75 5.41 85.22 0.46 1.21 15 11 N -0.85 -48.00 13.66 21.81 0.30 -47.70 15 12 Si 1.12 51.22 24.90 68.60 1.71 52.93 15 13 H -0.26 -10.74 6.43 99.48 0.64 -10.10 15 14 H -0.27 -12.47 7.04 99.48 0.70 -11.77 15 15 H -0.29 -12.54 7.11 99.48 0.71 -11.84 15 16 C -0.34 -16.57 9.61 22.85 0.22 -16.35 15 17 C 0.27 11.23 6.76 38.18 0.26 11.49 15 18 N -0.87 -27.74 9.08 -51.22 -0.47 -28.21 15 19 H 0.03 0.85 8.14 -2.39 -0.02 0.83 15 20 H 0.11 2.11 8.14 -2.38 -0.02 2.09 15 21 H 0.03 0.88 8.14 -2.39 -0.02 0.86 15 22 H 0.40 11.67 8.84 -92.71 -0.82 10.85 15 23 H 0.40 11.27 8.18 -92.70 -0.76 10.51 15 24 H 0.11 5.05 4.38 -2.91 -0.01 5.04 15 25 H 0.28 15.54 8.73 -92.71 -0.81 14.73 15 26 H 0.09 4.46 8.06 -2.91 -0.02 4.44 15 27 H 0.40 11.15 8.18 -92.71 -0.76 10.39 15 28 H 0.40 11.20 8.84 -92.71 -0.82 10.38 15 Total: -1.00 -63.61 240.93 1.09 -62.51 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: -2.04 Total: 39.21 kcal Atomic # 6 Polarization: -40.88 SS G_CDS: 2.86 Total: -38.02 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -0.63 Total: -104.74 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.81 Total: -11.89 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 1.71 Total: 52.93 kcal Total: -63.61 1.09 -62.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575723022.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.723 kcal (2) G-P(sol) polarization free energy of solvation -63.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds