Wall clock time and date at job start Mon Mar 30 2020 02:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46613 * 2 1 4 4 C 1.50694 * 109.47368 * 120.00254 * 2 1 3 5 5 C 1.38234 * 119.99928 * 59.73276 * 4 2 1 6 6 C 1.38239 * 119.99847 * 179.78754 * 5 4 2 7 7 C 1.38230 * 119.99974 * 0.43835 * 6 5 4 8 8 C 1.38240 * 120.00061 * 359.80911 * 7 6 5 9 9 C 1.38234 * 119.99935 * 239.99806 * 4 2 1 10 10 C 1.53004 * 109.46940 * 240.00648 * 2 1 3 11 11 H 1.08998 * 109.47285 * 184.99664 * 10 2 1 12 12 F 1.39897 * 109.46821 * 304.99757 * 10 2 1 13 13 C 1.50700 * 109.47208 * 64.99519 * 10 2 1 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 10 2 15 15 C 1.37871 * 120.00083 * 180.02562 * 13 10 2 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 10 18 18 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00001 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00094 * 17 15 13 21 21 H 1.09004 * 109.47250 * 299.99462 * 1 2 3 22 22 H 1.09000 * 109.47826 * 59.99834 * 1 2 3 23 23 H 1.09005 * 109.47352 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.99857 * 359.97438 * 5 4 2 25 25 H 1.07999 * 119.99702 * 180.26461 * 6 5 4 26 26 H 1.08005 * 120.00051 * 179.83822 * 7 6 5 27 27 H 1.08002 * 119.99815 * 180.02562 * 8 7 6 28 28 H 1.07994 * 120.00380 * 359.97438 * 9 4 2 29 29 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6939 -2.0323 1.4519 6 6 2.1583 -2.6852 2.5783 7 6 2.9538 -2.0137 3.4878 8 6 3.2880 -0.6904 3.2688 9 6 2.8271 -0.0386 2.1403 10 6 2.0399 -0.7211 -1.2494 11 1 3.1262 -0.7993 -1.2058 12 9 1.4821 -2.0027 -1.3083 13 6 1.6411 0.0572 -2.4766 14 1 1.0804 0.9747 -2.3756 15 6 1.9921 -0.4019 -3.7284 16 7 2.6744 -1.5194 -3.8515 17 14 1.4984 0.5633 -5.2497 18 1 1.9932 -0.1367 -6.4622 19 1 0.0185 0.6708 -5.3089 20 1 2.0915 1.9232 -5.1871 21 1 -0.3634 0.5138 0.8901 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.0690 -2.5557 0.7433 25 1 1.8974 -3.7192 2.7491 26 1 3.3145 -2.5231 4.3692 27 1 3.9099 -0.1659 3.9792 28 1 3.0884 0.9952 1.9692 29 1 2.9311 -2.0205 -3.0615 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584608917.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:07 Heat of formation + Delta-G solvation = -66.314298 kcal Electronic energy + Delta-G solvation = -13483.303700 eV Core-core repulsion = 11090.985072 eV Total energy + Delta-G solvation = -2392.318628 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.10865 -40.19345 -36.22916 -34.62285 -31.77797 -30.62050 -28.40276 -25.77258 -23.71117 -23.28453 -21.04511 -19.25250 -17.70157 -16.96327 -16.53414 -16.11283 -15.66194 -15.42112 -15.23179 -14.55024 -14.17253 -13.77486 -13.53383 -13.36745 -12.93979 -12.81531 -12.63356 -12.30165 -11.94631 -11.88562 -11.71912 -11.33437 -10.68743 -10.46750 -9.80918 -9.56143 -8.74474 -6.58176 0.46737 0.50992 1.52252 1.60889 1.80036 2.52787 2.89215 3.09776 3.78719 3.88393 4.16053 4.18365 4.25139 4.29946 4.36480 4.64200 4.66499 4.73038 4.95327 5.06395 5.13161 5.18168 5.25946 5.48734 5.57193 5.61688 5.74756 5.83989 6.05129 6.15432 6.38898 7.32457 8.62697 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.056858 B = 0.008562 C = 0.008287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.337667 B = 3269.592421 C = 3378.013722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.063 4.063 3 H 0.084 0.916 4 C -0.092 4.092 5 C -0.133 4.133 6 C -0.129 4.129 7 C -0.128 4.128 8 C -0.121 4.121 9 C -0.132 4.132 10 C 0.206 3.794 11 H -0.003 1.003 12 F -0.249 7.249 13 C -0.646 4.646 14 H 0.069 0.931 15 C -0.024 4.024 16 N -0.926 5.926 17 Si 1.121 2.879 18 H -0.285 1.285 19 H -0.268 1.268 20 H -0.262 1.262 21 H 0.068 0.932 22 H 0.054 0.946 23 H 0.042 0.958 24 H 0.107 0.893 25 H 0.138 0.862 26 H 0.152 0.848 27 H 0.152 0.848 28 H 0.131 0.869 29 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.939 2.714 12.482 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.082 4.082 3 H 0.103 0.897 4 C -0.092 4.092 5 C -0.151 4.151 6 C -0.147 4.147 7 C -0.146 4.146 8 C -0.139 4.139 9 C -0.150 4.150 10 C 0.170 3.830 11 H 0.015 0.985 12 F -0.231 7.231 13 C -0.683 4.683 14 H 0.088 0.912 15 C -0.224 4.224 16 N -0.561 5.561 17 Si 0.941 3.059 18 H -0.210 1.210 19 H -0.193 1.193 20 H -0.187 1.187 21 H 0.087 0.913 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.125 0.875 25 H 0.156 0.844 26 H 0.170 0.830 27 H 0.170 0.830 28 H 0.149 0.851 29 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.859 2.682 10.862 11.221 hybrid contribution 0.011 -0.452 1.371 1.444 sum -0.847 2.230 12.233 12.464 Atomic orbital electron populations 1.21581 0.93333 1.01366 1.01551 1.20580 0.97550 0.99017 0.91037 0.89718 1.20101 0.98245 0.94922 0.95951 1.21309 1.00954 0.94780 0.98083 1.21426 0.98412 1.00696 0.94150 1.21491 0.98163 0.94988 0.99973 1.21472 0.99858 0.95291 0.97278 1.21322 0.98090 1.00681 0.94868 1.19196 0.91755 0.76725 0.95335 0.98522 1.92623 1.87847 1.45067 1.97513 1.22687 1.41353 1.11448 0.92859 0.91242 1.27562 0.92694 0.96735 1.05447 1.70861 1.36228 1.15527 1.33448 0.82912 0.77069 0.74647 0.71283 1.21026 1.19289 1.18685 0.91313 0.92646 0.93901 0.87476 0.84437 0.83008 0.83043 0.85077 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.75 8.64 71.98 0.62 -4.13 15 2 C -0.06 -2.68 2.43 -11.54 -0.03 -2.71 15 3 H 0.08 3.43 7.88 -2.38 -0.02 3.41 15 4 C -0.09 -3.49 4.78 -19.87 -0.09 -3.59 15 5 C -0.13 -4.97 8.48 22.27 0.19 -4.78 15 6 C -0.13 -3.84 10.05 22.27 0.22 -3.62 15 7 C -0.13 -3.22 10.05 22.27 0.22 -2.99 15 8 C -0.12 -3.11 10.05 22.27 0.22 -2.88 15 9 C -0.13 -4.14 9.67 22.27 0.22 -3.92 15 10 C 0.21 10.94 2.34 29.85 0.07 11.01 15 11 H 0.00 -0.17 8.01 -2.39 -0.02 -0.19 15 12 F -0.25 -14.00 12.96 44.97 0.58 -13.42 15 13 C -0.65 -36.52 8.15 25.60 0.21 -36.31 15 14 H 0.07 3.73 7.06 -2.91 -0.02 3.71 15 15 C -0.02 -1.41 5.42 84.65 0.46 -0.95 15 16 N -0.93 -58.48 13.56 21.45 0.29 -58.19 15 17 Si 1.12 49.82 29.90 68.60 2.05 51.87 15 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 19 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 20 H -0.26 -10.58 7.11 99.48 0.71 -9.87 15 21 H 0.07 2.24 8.14 -2.38 -0.02 2.22 15 22 H 0.05 2.27 6.95 -2.39 -0.02 2.25 15 23 H 0.04 1.74 6.92 -2.38 -0.02 1.72 15 24 H 0.11 4.42 5.98 -2.91 -0.02 4.40 15 25 H 0.14 3.39 8.06 -2.91 -0.02 3.36 15 26 H 0.15 2.67 8.06 -2.91 -0.02 2.64 15 27 H 0.15 2.78 8.06 -2.91 -0.02 2.75 15 28 H 0.13 3.65 7.95 -2.91 -0.02 3.62 15 29 H 0.26 16.78 6.59 -92.70 -0.61 16.17 15 Total: -1.00 -67.32 247.44 6.53 -60.79 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 1.29 Total: 13.81 kcal Atomic # 6 Polarization: -57.18 SS G_CDS: 2.31 Total: -54.87 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.29 Total: -58.19 kcal Atomic # 9 Polarization: -14.00 SS G_CDS: 0.58 Total: -13.42 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 2.05 Total: 51.87 kcal Total: -67.32 6.53 -60.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584608917.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.520 kcal (2) G-P(sol) polarization free energy of solvation -67.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds