Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46645 * 2 1 4 4 C 1.50702 * 109.47185 * 239.99835 * 2 1 3 5 5 H 1.07991 * 119.99514 * 239.99780 * 4 2 1 6 6 C 1.37874 * 119.99934 * 59.99825 * 4 2 1 7 7 N 1.31518 * 119.99875 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99914 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.46994 * 60.00164 * 8 6 4 10 10 H 1.48501 * 109.46934 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46903 * 300.00225 * 8 6 4 12 12 C 1.50697 * 109.47091 * 119.99753 * 2 1 3 13 13 O 1.21280 * 120.00219 * 120.00146 * 12 2 1 14 14 N 1.34782 * 119.99824 * 299.99912 * 12 2 1 15 15 C 1.46502 * 119.99891 * 179.97438 * 14 12 2 16 16 C 1.47206 * 115.54912 * 325.58714 * 15 14 12 17 17 N 5.01264 * 99.98540 * 135.68797 * 2 1 3 18 18 C 1.52995 * 117.49642 * 111.25617 * 15 14 12 19 19 C 1.53000 * 117.50101 * 179.91482 * 15 14 12 20 20 H 1.08998 * 109.47495 * 60.00514 * 1 2 3 21 21 H 1.09001 * 109.47094 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47386 * 300.00430 * 1 2 3 23 23 H 0.97009 * 119.99537 * 179.97438 * 7 6 4 24 24 H 0.96995 * 120.00270 * 0.02562 * 14 12 2 25 25 H 1.09007 * 117.50112 * 215.00401 * 18 15 14 26 26 H 1.08997 * 117.50394 * 0.02562 * 18 15 14 27 27 H 1.09000 * 117.49640 * 359.97438 * 19 15 14 28 28 H 1.08999 * 117.49959 * 144.99512 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8281 -2.5199 -4.0081 10 1 1.8279 -0.4194 -5.2204 11 1 3.8076 -1.1191 -4.0076 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1946 -0.9407 3.6508 16 6 2.3093 -2.4038 3.5365 17 7 2.3992 -3.5324 3.4486 18 6 3.2310 -0.2159 4.5118 19 6 1.7920 -0.3677 5.0112 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 0.7095 1.1617 -3.4845 24 1 1.1488 0.5387 2.5436 25 1 3.9978 -0.8224 4.9938 26 1 3.5495 0.7751 4.1886 27 1 1.1645 0.5236 5.0161 28 1 1.6120 -1.0741 5.8215 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597249114.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = 16.287380 kcal Electronic energy + Delta-G solvation = -13270.751077 eV Core-core repulsion = 10901.934287 eV Total energy + Delta-G solvation = -2368.816789 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.58323 -37.36782 -35.34971 -33.79038 -32.41226 -30.22414 -25.17257 -24.26683 -22.78365 -22.48299 -19.87844 -17.58744 -16.41859 -16.13033 -15.34292 -14.51781 -14.26108 -14.03354 -13.21887 -13.14311 -12.62208 -12.59822 -12.30465 -11.74925 -11.58693 -11.07881 -11.01780 -10.78311 -10.74220 -10.71164 -10.28020 -9.99012 -9.03384 -8.72003 -8.58027 -8.36849 -6.06152 -4.09375 2.72916 2.85995 3.36026 3.38079 3.43969 3.52531 3.56229 3.95311 4.01273 4.45473 4.73207 4.85441 5.24305 5.27787 5.39921 5.69034 5.88241 6.09204 6.55817 6.76509 6.78681 6.88078 7.40753 7.70119 7.83670 7.93876 8.06522 8.33302 8.99132 9.07482 9.56378 11.01342 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.048887 B = 0.008448 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.616994 B = 3313.435240 C = 3614.290422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.035 3.965 3 H 0.057 0.943 4 C -0.503 4.503 5 H 0.073 0.927 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.518 3.482 13 O -0.528 6.528 14 N -0.708 5.708 15 C 0.188 3.812 16 C 0.249 3.751 17 N -0.414 5.414 18 C -0.161 4.161 19 C -0.152 4.152 20 H 0.095 0.905 21 H 0.031 0.969 22 H 0.014 0.986 23 H 0.262 0.738 24 H 0.409 0.591 25 H 0.105 0.895 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 3.917 12.875 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.014 3.986 3 H 0.074 0.926 4 C -0.542 4.542 5 H 0.091 0.909 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.308 3.692 13 O -0.401 6.401 14 N -0.365 5.365 15 C 0.096 3.904 16 C -0.069 4.069 17 N -0.091 5.091 18 C -0.201 4.201 19 C -0.191 4.191 20 H 0.113 0.887 21 H 0.050 0.950 22 H 0.033 0.967 23 H 0.072 0.928 24 H 0.246 0.754 25 H 0.124 0.876 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.052 1.590 12.431 12.533 hybrid contribution -0.040 0.419 -0.855 0.953 sum 0.012 2.009 11.576 11.749 Atomic orbital electron populations 1.21771 0.96347 0.99956 1.01125 1.18876 0.94214 0.96894 0.88659 0.92570 1.21090 1.31221 1.12910 0.88956 0.90861 1.24927 0.95032 0.95037 0.99090 1.69856 1.36985 1.22988 1.23727 0.86497 0.79323 0.79742 0.81550 1.20203 1.21322 1.20153 1.22289 0.78274 0.84415 0.84175 1.90585 1.37218 1.26471 1.85854 1.45868 1.55397 1.32064 1.03139 1.16668 1.05738 0.81563 0.86402 1.27157 0.93693 0.92804 0.93237 1.81096 1.07981 1.12435 1.07582 1.23611 0.92730 1.02778 1.01008 1.23471 0.98693 1.03224 0.93715 0.88657 0.94978 0.96738 0.92847 0.75447 0.87630 0.86632 0.86594 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.87 37.16 0.33 -2.65 15 2 C 0.03 0.84 2.64 -92.92 -0.25 0.59 15 3 H 0.06 1.37 8.14 -51.93 -0.42 0.95 15 4 C -0.50 -14.19 8.37 -34.44 -0.29 -14.48 15 5 H 0.07 2.21 6.75 -52.49 -0.35 1.85 15 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 15 7 N -0.90 -24.77 11.32 55.43 0.63 -24.14 15 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 15 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 15 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 12 C 0.52 11.45 6.98 -10.98 -0.08 11.38 15 13 O -0.53 -13.76 13.63 5.56 0.08 -13.68 15 14 N -0.71 -11.34 5.48 -50.22 -0.28 -11.61 15 15 C 0.19 2.65 2.86 -134.60 -0.38 2.26 15 16 C 0.25 4.55 12.84 -20.77 -0.27 4.28 15 17 N -0.41 -8.54 18.54 42.14 0.78 -7.76 15 18 C -0.16 -1.61 10.14 -26.70 -0.27 -1.89 15 19 C -0.15 -1.30 10.10 -26.70 -0.27 -1.57 15 20 H 0.09 2.34 6.07 -51.93 -0.32 2.03 15 21 H 0.03 0.73 8.14 -51.93 -0.42 0.30 15 22 H 0.01 0.25 7.56 -51.93 -0.39 -0.14 15 23 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 24 H 0.41 5.15 8.19 -40.82 -0.33 4.82 15 25 H 0.11 0.99 8.14 -51.93 -0.42 0.56 15 26 H 0.12 1.03 8.14 -51.93 -0.42 0.61 15 27 H 0.12 0.72 8.14 -51.93 -0.42 0.30 15 28 H 0.11 0.80 8.14 -51.93 -0.42 0.38 15 LS Contribution 253.66 15.07 3.82 3.82 Total: -1.00 -33.20 253.66 -4.62 -37.82 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -3.07 Total: -0.85 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -1.57 Total: -0.51 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 1.13 Total: -43.51 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.68 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.20 -4.62 -37.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597249114.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.110 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds