Wall clock time and date at job start Mon Mar 30 2020 02:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.47061 * 111.00162 * 169.99658 * 10 9 7 12 12 C 1.53219 * 109.69249 * 174.65027 * 11 10 9 13 13 C 1.53629 * 108.78736 * 292.69571 * 12 11 10 14 14 N 1.46473 * 107.70569 * 46.03459 * 13 12 11 15 15 N 1.39643 * 128.43410 * 165.11289 * 14 13 12 16 16 C 1.30867 * 106.71341 * 179.97438 * 15 14 13 17 17 N 1.33567 * 109.16648 * 0.02562 * 16 15 14 18 18 C 1.31249 * 109.66959 * 359.97438 * 17 16 15 19 19 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 21 21 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 22 22 H 1.08999 * 109.43509 * 294.72660 * 11 10 9 23 23 H 1.09006 * 109.43181 * 54.63251 * 11 10 9 24 24 H 1.09002 * 109.57883 * 52.48836 * 12 11 10 25 25 H 1.09002 * 109.58216 * 172.76121 * 12 11 10 26 26 H 1.09000 * 109.81610 * 165.58657 * 13 12 11 27 27 H 1.09005 * 109.81534 * 286.42468 * 13 12 11 28 28 H 1.08006 * 125.41387 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5202 -4.8950 0.2359 12 6 2.5187 -6.0490 0.0980 13 6 2.9649 -6.1445 -1.3689 14 7 3.2802 -4.7897 -1.8278 15 7 3.9831 -4.4018 -2.9704 16 6 4.0158 -3.0936 -2.9660 17 7 3.3738 -2.6424 -1.8851 18 6 2.9217 -3.6561 -1.1847 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5575 0.8880 21 1 0.6246 -2.5563 -0.8919 22 1 1.0976 -4.8990 1.2406 23 1 0.7206 -5.0190 -0.4944 24 1 3.3850 -5.8601 0.7320 25 1 2.0423 -6.9821 0.3988 26 1 3.8501 -6.7759 -1.4455 27 1 2.1599 -6.5623 -1.9736 28 1 4.4871 -2.4768 -3.7170 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685969491.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:33 Heat of formation + Delta-G solvation = 108.465665 kcal Electronic energy + Delta-G solvation = -13808.506577 eV Core-core repulsion = 11475.979689 eV Total energy + Delta-G solvation = -2332.526888 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.58571 -37.51190 -34.60240 -32.30135 -30.30149 -29.76001 -27.39401 -24.74606 -23.09133 -22.24095 -20.81512 -18.85494 -16.99626 -16.04399 -15.72224 -15.03238 -14.82362 -14.29542 -13.87819 -13.60745 -13.19920 -12.36232 -11.99841 -11.77652 -11.46269 -11.27827 -10.92973 -10.69559 -10.58197 -9.95916 -9.65573 -9.23555 -9.04911 -8.86767 -8.31574 -7.54159 -5.93916 -3.89484 2.31932 2.78867 3.44272 3.48956 3.54647 3.71490 4.21696 4.52313 4.60136 4.77885 5.07349 5.23130 5.38270 5.44745 5.48994 5.53745 5.80254 5.89612 6.04218 6.44142 6.90900 7.05824 7.15568 7.25270 7.55246 7.97964 8.11867 8.36844 8.99812 9.18478 9.71371 11.18375 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.041028 B = 0.011137 C = 0.009282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.303819 B = 2513.460404 C = 3015.736772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.052 3.948 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.477 4.477 8 H 0.077 0.923 9 C 0.202 3.798 10 N -0.448 5.448 11 C 0.045 3.955 12 C -0.139 4.139 13 C 0.133 3.867 14 N -0.419 5.419 15 N -0.349 5.349 16 C 0.200 3.800 17 N -0.516 5.516 18 C 0.477 3.523 19 H 0.259 0.741 20 H 0.047 0.953 21 H 0.006 0.994 22 H 0.099 0.901 23 H 0.047 0.953 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 -11.356 -0.792 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.516 4.516 8 H 0.095 0.905 9 C 0.080 3.920 10 N -0.171 5.171 11 C -0.083 4.083 12 C -0.178 4.178 13 C 0.010 3.990 14 N -0.216 5.216 15 N -0.179 5.179 16 C -0.104 4.104 17 N -0.248 5.248 18 C 0.113 3.887 19 H 0.069 0.931 20 H 0.065 0.935 21 H 0.024 0.976 22 H 0.117 0.883 23 H 0.065 0.935 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.820 -11.318 -0.811 11.973 hybrid contribution -0.185 0.672 -0.456 0.833 sum 3.635 -10.646 -1.268 11.320 Atomic orbital electron populations 1.69955 1.06059 1.26712 1.52452 1.24890 0.94795 0.99285 0.95766 0.86372 0.79557 0.82680 0.78009 1.20744 1.21742 1.19894 1.21057 0.94183 0.88522 1.47846 0.90507 1.20009 0.88652 0.85997 0.97378 1.59140 1.28332 1.06411 1.23210 1.22304 0.95157 0.87545 1.03313 1.22173 1.01022 0.99739 0.94875 1.21768 1.01395 0.80809 0.95020 1.50407 1.45886 1.06704 1.18606 1.77701 1.21405 1.14999 1.03801 1.26010 0.97633 0.89901 0.96870 1.71213 1.19649 1.27243 1.06674 1.22441 0.95201 0.82066 0.88991 0.93110 0.93532 0.97622 0.88315 0.93453 0.89685 0.88426 0.89387 0.90338 0.77453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.19 13.29 55.43 0.74 -26.45 15 2 C 0.05 1.51 5.46 -17.82 -0.10 1.41 15 3 Si 0.91 22.63 29.54 -169.99 -5.02 17.61 15 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 15 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 15 6 H -0.27 -6.77 7.11 56.52 0.40 -6.37 15 7 C -0.48 -13.61 7.84 -34.44 -0.27 -13.88 15 8 H 0.08 2.27 6.99 -52.49 -0.37 1.90 15 9 C 0.20 5.19 4.64 -4.98 -0.02 5.17 15 10 N -0.45 -9.67 4.73 -176.07 -0.83 -10.51 15 11 C 0.04 0.70 5.45 -3.62 -0.02 0.68 15 12 C -0.14 -1.66 6.19 -26.29 -0.16 -1.82 15 13 C 0.13 1.78 7.42 -3.73 -0.03 1.76 15 14 N -0.42 -7.99 4.06 -61.64 -0.25 -8.24 15 15 N -0.35 -6.88 12.72 29.38 0.37 -6.50 15 16 C 0.20 3.99 13.03 -91.40 -1.19 2.80 15 17 N -0.52 -12.34 8.94 -15.12 -0.14 -12.48 15 18 C 0.48 10.61 7.10 -320.91 -2.28 8.33 15 19 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 20 H 0.05 1.21 8.08 -51.93 -0.42 0.79 15 21 H 0.01 0.16 8.10 -51.93 -0.42 -0.26 15 22 H 0.10 1.38 8.14 -51.93 -0.42 0.95 15 23 H 0.05 0.74 8.12 -51.93 -0.42 0.32 15 24 H 0.08 1.07 8.14 -51.93 -0.42 0.64 15 25 H 0.10 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.09 1.02 8.14 -51.93 -0.42 0.59 15 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 28 H 0.21 3.24 8.06 -52.48 -0.42 2.82 15 LS Contribution 240.10 15.07 3.62 3.62 Total: -1.00 -33.69 240.10 -8.88 -42.57 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -3.30 Total: -4.07 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -4.07 Total: 4.45 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -0.11 Total: -64.17 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -33.69 -8.88 -42.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969491.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.038 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds