Wall clock time and date at job start Mon Mar 30 2020 02:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.47061 * 111.00162 * 169.99658 * 10 9 7 12 12 C 1.53219 * 109.69249 * 174.65027 * 11 10 9 13 13 C 1.53629 * 108.78736 * 292.69571 * 12 11 10 14 14 N 1.46473 * 107.70569 * 46.03459 * 13 12 11 15 15 N 1.39643 * 128.43410 * 165.11289 * 14 13 12 16 16 C 1.30867 * 106.71341 * 179.97438 * 15 14 13 17 17 N 1.33567 * 109.16648 * 0.02562 * 16 15 14 18 18 C 1.31249 * 109.66959 * 359.97438 * 17 16 15 19 19 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 21 21 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 22 22 H 1.08999 * 109.43509 * 294.72660 * 11 10 9 23 23 H 1.09006 * 109.43181 * 54.63251 * 11 10 9 24 24 H 1.09002 * 109.57883 * 52.48836 * 12 11 10 25 25 H 1.09002 * 109.58216 * 172.76121 * 12 11 10 26 26 H 1.09000 * 109.81610 * 165.58657 * 13 12 11 27 27 H 1.09005 * 109.81534 * 286.42468 * 13 12 11 28 28 H 1.08006 * 125.41387 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5202 -4.8950 0.2359 12 6 2.5187 -6.0490 0.0980 13 6 2.9649 -6.1445 -1.3689 14 7 3.2802 -4.7897 -1.8278 15 7 3.9831 -4.4018 -2.9704 16 6 4.0158 -3.0936 -2.9660 17 7 3.3738 -2.6424 -1.8851 18 6 2.9217 -3.6561 -1.1847 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5575 0.8880 21 1 0.6246 -2.5563 -0.8919 22 1 1.0976 -4.8990 1.2406 23 1 0.7206 -5.0190 -0.4944 24 1 3.3850 -5.8601 0.7320 25 1 2.0423 -6.9821 0.3988 26 1 3.8501 -6.7759 -1.4455 27 1 2.1599 -6.5623 -1.9736 28 1 4.4871 -2.4768 -3.7170 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685969491.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:33 Heat of formation + Delta-G solvation = 86.995452 kcal Electronic energy + Delta-G solvation = -13809.437595 eV Core-core repulsion = 11475.979689 eV Total energy + Delta-G solvation = -2333.457906 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.12135 -39.00305 -36.13007 -34.36138 -31.68228 -31.33998 -29.26222 -26.28129 -24.73173 -23.87595 -22.36792 -20.24387 -18.77872 -17.72013 -17.30132 -16.83447 -16.23880 -15.98551 -15.29335 -15.15890 -14.60684 -14.12657 -13.60050 -13.39903 -13.05013 -12.73242 -12.52588 -12.42854 -12.19865 -11.90614 -11.41656 -11.16399 -10.58932 -10.51749 -10.47873 -9.19162 -8.13878 -6.15484 0.74943 1.41436 1.43954 1.46973 1.57572 2.12607 2.47553 2.78653 3.21013 3.38771 3.64282 3.92987 4.02733 4.15286 4.40007 4.45818 4.49837 4.79146 4.87022 4.99890 5.07740 5.37374 5.49105 5.63368 5.73751 5.92645 6.19158 6.48240 6.93247 7.43566 7.48856 8.98311 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.041028 B = 0.011137 C = 0.009282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.303819 B = 2513.460404 C = 3015.736772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.485 4.485 8 H 0.062 0.938 9 C 0.221 3.779 10 N -0.458 5.458 11 C 0.035 3.965 12 C -0.123 4.123 13 C 0.118 3.882 14 N -0.412 5.412 15 N -0.349 5.349 16 C 0.192 3.808 17 N -0.569 5.569 18 C 0.456 3.544 19 H 0.262 0.738 20 H 0.039 0.961 21 H -0.028 1.028 22 H 0.115 0.885 23 H 0.045 0.955 24 H 0.081 0.919 25 H 0.150 0.850 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 -12.780 -0.640 13.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.523 4.523 8 H 0.081 0.919 9 C 0.096 3.904 10 N -0.181 5.181 11 C -0.092 4.092 12 C -0.162 4.162 13 C -0.002 4.002 14 N -0.209 5.209 15 N -0.179 5.179 16 C -0.111 4.111 17 N -0.302 5.302 18 C 0.091 3.909 19 H 0.071 0.929 20 H 0.057 0.943 21 H -0.010 1.010 22 H 0.134 0.866 23 H 0.063 0.937 24 H 0.099 0.901 25 H 0.168 0.832 26 H 0.131 0.869 27 H 0.117 0.883 28 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.523 -12.799 -0.656 13.590 hybrid contribution -0.393 0.992 -0.535 1.194 sum 4.130 -11.807 -1.191 12.565 Atomic orbital electron populations 1.70051 1.07297 1.27562 1.53424 1.25678 0.95628 1.02576 0.95555 0.85430 0.78500 0.78922 0.77974 1.20631 1.20683 1.19470 1.21241 0.93637 0.90137 1.47321 0.91934 1.19536 0.88612 0.87022 0.95209 1.59015 1.27881 1.07762 1.23453 1.22607 0.96065 0.86335 1.04174 1.22212 1.00050 1.00113 0.93788 1.22354 1.03333 0.78395 0.96162 1.50729 1.44616 1.07930 1.17594 1.77627 1.21263 1.14894 1.04164 1.26620 0.97417 0.90376 0.96703 1.71056 1.21081 1.29657 1.08414 1.22399 0.95884 0.83125 0.89488 0.92944 0.94271 1.01001 0.86638 0.93654 0.90058 0.83203 0.86855 0.88301 0.74308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.08 13.29 21.45 0.28 -56.79 15 2 C 0.00 0.12 5.46 84.65 0.46 0.58 15 3 Si 0.97 46.86 29.54 68.60 2.03 48.89 15 4 H -0.28 -13.47 7.11 99.48 0.71 -12.76 15 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 15 6 H -0.27 -12.81 7.11 99.48 0.71 -12.10 15 7 C -0.48 -28.23 7.84 25.60 0.20 -28.03 15 8 H 0.06 3.77 6.99 -2.91 -0.02 3.75 15 9 C 0.22 11.63 4.64 85.56 0.40 12.02 15 10 N -0.46 -19.79 4.73 -710.96 -3.37 -23.15 15 11 C 0.03 1.03 5.45 86.35 0.47 1.50 15 12 C -0.12 -2.49 6.19 30.88 0.19 -2.30 15 13 C 0.12 2.77 7.42 86.60 0.64 3.41 15 14 N -0.41 -15.05 4.06 -348.92 -1.42 -16.46 15 15 N -0.35 -13.29 12.72 -60.96 -0.78 -14.07 15 16 C 0.19 7.58 13.03 180.62 2.35 9.93 15 17 N -0.57 -27.50 8.94 -201.73 -1.80 -29.30 15 18 C 0.46 20.21 7.10 260.82 1.85 22.07 15 19 H 0.26 15.03 8.31 -92.71 -0.77 14.26 15 20 H 0.04 2.09 8.08 -2.39 -0.02 2.07 15 21 H -0.03 -1.62 8.10 -2.39 -0.02 -1.64 15 22 H 0.12 3.00 8.14 -2.39 -0.02 2.98 15 23 H 0.05 1.37 8.12 -2.38 -0.02 1.35 15 24 H 0.08 1.76 8.14 -2.39 -0.02 1.75 15 25 H 0.15 1.54 8.14 -2.39 -0.02 1.52 15 26 H 0.11 2.14 8.14 -2.39 -0.02 2.12 15 27 H 0.10 1.97 8.14 -2.38 -0.02 1.95 15 28 H 0.24 7.23 8.06 -2.91 -0.02 7.21 15 Total: -1.00 -74.30 240.10 2.67 -71.63 By element: Atomic # 1 Polarization: -1.08 SS G_CDS: 1.15 Total: 0.07 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 6.57 Total: 19.19 kcal Atomic # 7 Polarization: -132.70 SS G_CDS: -7.08 Total: -139.78 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -74.30 2.67 -71.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969491.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.626 kcal (2) G-P(sol) polarization free energy of solvation -74.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds