Wall clock time and date at job start Mon Mar 30 2020 02:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99637 * 2 1 4 4 H 1.48500 * 109.47107 * 269.99610 * 3 2 1 5 5 H 1.48497 * 109.47662 * 30.00119 * 3 2 1 6 6 H 1.48505 * 109.46794 * 150.00262 * 3 2 1 7 7 C 1.37869 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00299 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99830 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.47962 * 110.99960 * 169.99757 * 10 9 7 12 12 C 1.53939 * 86.17995 * 222.42316 * 11 10 9 13 13 N 1.46500 * 113.73108 * 269.25641 * 12 11 10 14 14 C 1.34428 * 126.82014 * 82.81401 * 13 12 11 15 15 N 1.30838 * 108.07621 * 179.89290 * 14 13 12 16 16 C 1.33236 * 109.82619 * 0.37900 * 15 14 13 17 17 N 1.30708 * 108.94883 * 359.76280 * 16 15 14 18 18 C 1.47963 * 110.99442 * 70.64116 * 10 9 7 19 19 H 0.97004 * 120.00636 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47462 * 60.00042 * 9 7 2 21 21 H 1.09000 * 109.47361 * 299.99539 * 9 7 2 22 22 H 1.08991 * 113.75516 * 108.10700 * 11 10 9 23 23 H 1.09003 * 113.75945 * 336.73836 * 11 10 9 24 24 H 1.09002 * 113.73278 * 138.08129 * 12 11 10 25 25 H 1.07999 * 125.96656 * 0.03426 * 14 13 12 26 26 H 1.08007 * 125.52884 * 179.72839 * 16 15 14 27 27 H 1.09003 * 113.76284 * 23.26689 * 18 10 9 28 28 H 1.09007 * 113.75909 * 251.89873 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5162 -4.9027 0.2405 12 6 2.6928 -5.2411 1.1737 13 7 3.7970 -5.9323 0.5035 14 6 4.7873 -5.3673 -0.2087 15 7 5.5727 -6.3210 -0.6394 16 6 5.1137 -7.5033 -0.2312 17 7 4.0279 -7.3172 0.4722 18 6 2.8982 -3.7210 1.3038 19 1 -0.4851 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 1.4577 -5.5405 -0.6414 23 1 0.5617 -4.8000 0.7567 24 1 2.3908 -5.7242 2.1029 25 1 4.9139 -4.3105 -0.3914 26 1 5.5653 -8.4604 -0.4470 27 1 2.3479 -3.2728 2.1311 28 1 3.9438 -3.4148 1.2716 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687713340.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:40 Heat of formation + Delta-G solvation = 130.193514 kcal Electronic energy + Delta-G solvation = -13286.619335 eV Core-core repulsion = 10955.034638 eV Total energy + Delta-G solvation = -2331.584698 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.90659 -39.24672 -33.45513 -32.27393 -30.94560 -28.98398 -25.99988 -25.49420 -22.97244 -21.70320 -21.23653 -19.43275 -16.90170 -16.48840 -15.74445 -15.17273 -14.85767 -14.20900 -14.11589 -13.71281 -13.42380 -12.41006 -12.12546 -11.97786 -11.53626 -11.09050 -11.00618 -10.67144 -10.58222 -9.93675 -9.81720 -9.54439 -9.40826 -9.27687 -8.61728 -8.03880 -6.16745 -4.20056 1.86673 2.46839 3.18842 3.24609 3.31308 3.33716 4.23049 4.36536 4.47895 4.60856 4.99463 5.08831 5.19912 5.39746 5.71563 5.73934 5.87842 5.99682 6.07028 6.37809 6.48681 6.64581 6.98240 7.09536 7.46377 7.68690 7.91818 8.23256 8.31909 8.86628 9.45687 10.94220 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.058117 B = 0.007356 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.670216 B = 3805.552270 C = 4115.937582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.160 3.840 10 N -0.477 5.477 11 C -0.005 4.005 12 C 0.116 3.884 13 N -0.351 5.351 14 C 0.280 3.720 15 N -0.559 5.559 16 C 0.189 3.811 17 N -0.331 5.331 18 C 0.019 3.981 19 H 0.263 0.737 20 H 0.035 0.965 21 H 0.003 0.997 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.107 0.893 25 H 0.221 0.779 26 H 0.212 0.788 27 H 0.093 0.907 28 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.369 -9.159 2.844 10.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.034 3.966 10 N -0.201 5.201 11 C -0.135 4.135 12 C 0.011 3.989 13 N -0.139 5.139 14 C -0.017 4.017 15 N -0.287 5.287 16 C -0.114 4.114 17 N -0.159 5.159 18 C -0.111 4.111 19 H 0.073 0.927 20 H 0.053 0.947 21 H 0.020 0.980 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.125 0.875 25 H 0.237 0.763 26 H 0.229 0.771 27 H 0.111 0.889 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.384 -9.411 2.413 11.107 hybrid contribution -0.371 1.193 0.636 1.402 sum 5.013 -8.218 3.049 10.098 Atomic orbital electron populations 1.69944 1.06128 1.27068 1.50331 1.24986 0.94875 0.99479 0.95041 0.86474 0.79685 0.82863 0.78276 1.20510 1.21239 1.19757 1.21040 0.93419 0.89811 1.51121 0.91888 1.20236 0.90904 0.88487 0.96945 1.68683 1.21753 1.02300 1.27362 1.24304 0.95494 0.94958 0.98764 1.22969 0.86102 0.93836 0.95954 1.50092 1.20976 1.04078 1.38799 1.26104 0.84676 1.00900 0.89974 1.70607 1.31111 0.98523 1.28501 1.25914 0.91899 0.98138 0.95433 1.77965 1.20063 0.92496 1.25387 1.24162 1.02333 0.89165 0.95434 0.92724 0.94684 0.97961 0.89771 0.89897 0.87534 0.76315 0.77126 0.88862 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 13.28 55.43 0.74 -24.81 15 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 15 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.52 -13.59 8.84 -34.44 -0.30 -13.89 15 8 H 0.06 1.63 7.80 -52.49 -0.41 1.22 15 9 C 0.16 3.85 4.58 -4.97 -0.02 3.83 15 10 N -0.48 -9.24 6.03 -239.87 -1.45 -10.69 15 11 C 0.00 -0.08 7.77 -2.76 -0.02 -0.10 15 12 C 0.12 1.70 5.28 -69.62 -0.37 1.33 15 13 N -0.35 -5.51 3.84 -57.25 -0.22 -5.73 15 14 C 0.28 4.37 11.52 -90.65 -1.04 3.33 15 15 N -0.56 -8.94 11.19 -15.83 -0.18 -9.12 15 16 C 0.19 2.71 13.03 -91.82 -1.20 1.51 15 17 N -0.33 -5.26 12.70 29.29 0.37 -4.89 15 18 C 0.02 0.31 6.65 -2.76 -0.02 0.29 15 19 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 20 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.00 0.06 7.69 -51.93 -0.40 -0.33 15 22 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 23 H 0.08 1.28 7.79 -51.93 -0.40 0.88 15 24 H 0.11 1.37 8.14 -51.93 -0.42 0.95 15 25 H 0.22 3.13 7.29 -52.49 -0.38 2.75 15 26 H 0.21 2.11 8.06 -52.48 -0.42 1.69 15 27 H 0.09 1.51 7.78 -51.93 -0.40 1.11 15 28 H 0.09 1.34 7.05 -51.93 -0.37 0.97 15 LS Contribution 247.21 15.07 3.73 3.73 Total: -1.00 -30.15 247.21 -8.29 -38.44 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -3.19 Total: -0.46 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -3.07 Total: -2.22 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.73 Total: -55.24 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.15 -8.29 -38.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687713340.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.633 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds