Wall clock time and date at job start Mon Mar 30 2020 02:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99637 * 2 1 4 4 H 1.48500 * 109.47107 * 269.99610 * 3 2 1 5 5 H 1.48497 * 109.47662 * 30.00119 * 3 2 1 6 6 H 1.48505 * 109.46794 * 150.00262 * 3 2 1 7 7 C 1.37869 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00299 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99830 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.47962 * 110.99960 * 169.99757 * 10 9 7 12 12 C 1.53939 * 86.17995 * 222.42316 * 11 10 9 13 13 N 1.46500 * 113.73108 * 269.25641 * 12 11 10 14 14 C 1.34428 * 126.82014 * 82.81401 * 13 12 11 15 15 N 1.30838 * 108.07621 * 179.89290 * 14 13 12 16 16 C 1.33236 * 109.82619 * 0.37900 * 15 14 13 17 17 N 1.30708 * 108.94883 * 359.76280 * 16 15 14 18 18 C 1.47963 * 110.99442 * 70.64116 * 10 9 7 19 19 H 0.97004 * 120.00636 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47462 * 60.00042 * 9 7 2 21 21 H 1.09000 * 109.47361 * 299.99539 * 9 7 2 22 22 H 1.08991 * 113.75516 * 108.10700 * 11 10 9 23 23 H 1.09003 * 113.75945 * 336.73836 * 11 10 9 24 24 H 1.09002 * 113.73278 * 138.08129 * 12 11 10 25 25 H 1.07999 * 125.96656 * 0.03426 * 14 13 12 26 26 H 1.08007 * 125.52884 * 179.72839 * 16 15 14 27 27 H 1.09003 * 113.76284 * 23.26689 * 18 10 9 28 28 H 1.09007 * 113.75909 * 251.89873 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5162 -4.9027 0.2405 12 6 2.6928 -5.2411 1.1737 13 7 3.7970 -5.9323 0.5035 14 6 4.7873 -5.3673 -0.2087 15 7 5.5727 -6.3210 -0.6394 16 6 5.1137 -7.5033 -0.2312 17 7 4.0279 -7.3172 0.4722 18 6 2.8982 -3.7210 1.3038 19 1 -0.4851 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 1.4577 -5.5405 -0.6414 23 1 0.5617 -4.8000 0.7567 24 1 2.3908 -5.7242 2.1029 25 1 4.9139 -4.3105 -0.3914 26 1 5.5653 -8.4604 -0.4470 27 1 2.3479 -3.2728 2.1311 28 1 3.9438 -3.4148 1.2716 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687713340.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:39 Heat of formation + Delta-G solvation = 110.187455 kcal Electronic energy + Delta-G solvation = -13287.486863 eV Core-core repulsion = 10955.034638 eV Total energy + Delta-G solvation = -2332.452225 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.09569 -40.64384 -35.27211 -33.79248 -32.14897 -30.63785 -27.47926 -27.05921 -24.49748 -23.01916 -22.62967 -20.71485 -18.61537 -17.97835 -17.25941 -16.48256 -16.30394 -15.83632 -15.42311 -15.20700 -14.78530 -13.91818 -13.73031 -13.45044 -13.07018 -12.80403 -12.62609 -12.39536 -12.14494 -11.64905 -11.26890 -11.00902 -10.74510 -10.64556 -10.57718 -9.62411 -8.22809 -6.32821 0.68081 1.29498 1.43029 1.44253 1.54472 2.04097 2.39793 2.97363 3.10818 3.18388 3.54921 3.76413 3.90752 4.16696 4.42432 4.52247 4.57302 4.66873 4.74176 4.86873 5.07039 5.32953 5.51078 5.55232 5.75730 5.89945 6.06168 6.32232 6.82346 7.15412 7.37688 8.88594 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.058117 B = 0.007356 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.670216 B = 3805.552270 C = 4115.937582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.526 4.526 8 H 0.066 0.934 9 C 0.175 3.825 10 N -0.492 5.492 11 C -0.003 4.003 12 C 0.135 3.865 13 N -0.358 5.358 14 C 0.274 3.726 15 N -0.577 5.577 16 C 0.193 3.807 17 N -0.350 5.350 18 C 0.022 3.978 19 H 0.264 0.736 20 H 0.000 1.000 21 H -0.013 1.013 22 H 0.079 0.921 23 H 0.092 0.908 24 H 0.133 0.867 25 H 0.228 0.772 26 H 0.249 0.751 27 H 0.094 0.906 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.688 -9.601 3.384 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.564 4.564 8 H 0.084 0.916 9 C 0.048 3.952 10 N -0.215 5.215 11 C -0.133 4.133 12 C 0.031 3.969 13 N -0.147 5.147 14 C -0.022 4.022 15 N -0.305 5.305 16 C -0.109 4.109 17 N -0.177 5.177 18 C -0.107 4.107 19 H 0.073 0.927 20 H 0.018 0.982 21 H 0.005 0.995 22 H 0.098 0.902 23 H 0.110 0.890 24 H 0.151 0.849 25 H 0.244 0.756 26 H 0.265 0.735 27 H 0.112 0.888 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.718 -9.874 2.958 12.303 hybrid contribution -0.757 1.242 0.437 1.519 sum 5.961 -8.632 3.395 11.026 Atomic orbital electron populations 1.70066 1.07725 1.27941 1.51589 1.25857 0.95645 1.03124 0.94735 0.85430 0.78761 0.78489 0.78242 1.20374 1.21031 1.18438 1.21403 0.93739 0.90916 1.50329 0.91563 1.19883 0.90992 0.89807 0.94485 1.68585 1.21234 1.01904 1.29822 1.24323 0.96602 0.93168 0.99250 1.22783 0.84907 0.93050 0.96189 1.50153 1.21154 1.04288 1.39108 1.26319 0.84746 1.01342 0.89805 1.70639 1.31614 0.99229 1.29012 1.26691 0.91156 0.99046 0.94029 1.77949 1.20967 0.92439 1.26368 1.24169 1.02426 0.90454 0.93693 0.92693 0.98194 0.99494 0.90224 0.89036 0.84939 0.75635 0.73473 0.88753 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.90 13.28 21.44 0.28 -53.61 15 2 C 0.00 0.27 5.46 84.65 0.46 0.73 15 3 Si 0.97 42.30 29.54 68.60 2.03 44.33 15 4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 6 H -0.26 -10.78 7.11 99.48 0.71 -10.08 15 7 C -0.53 -27.72 8.84 25.60 0.23 -27.49 15 8 H 0.07 3.38 7.80 -2.91 -0.02 3.35 15 9 C 0.18 8.56 4.58 85.56 0.39 8.95 15 10 N -0.49 -18.84 6.03 -912.82 -5.50 -24.35 15 11 C 0.00 -0.11 7.77 86.41 0.67 0.57 15 12 C 0.13 3.69 5.28 46.56 0.25 3.93 15 13 N -0.36 -10.56 3.84 -335.04 -1.29 -11.84 15 14 C 0.27 8.12 11.52 180.36 2.08 10.20 15 15 N -0.58 -17.31 11.19 -204.00 -2.28 -19.59 15 16 C 0.19 5.06 13.03 180.77 2.36 7.41 15 17 N -0.35 -10.32 12.70 -61.25 -0.78 -11.10 15 18 C 0.02 0.69 6.65 86.41 0.57 1.27 15 19 H 0.26 14.44 8.31 -92.71 -0.77 13.67 15 20 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 15 21 H -0.01 -0.65 7.69 -2.39 -0.02 -0.66 15 22 H 0.08 2.60 8.14 -2.39 -0.02 2.58 15 23 H 0.09 2.77 7.79 -2.39 -0.02 2.75 15 24 H 0.13 3.02 8.14 -2.39 -0.02 3.00 15 25 H 0.23 6.16 7.29 -2.91 -0.02 6.14 15 26 H 0.25 4.14 8.06 -2.91 -0.02 4.12 15 27 H 0.09 2.94 7.78 -2.39 -0.02 2.92 15 28 H 0.10 2.82 7.05 -2.38 -0.02 2.80 15 Total: -1.00 -63.57 247.21 0.62 -62.95 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.15 Total: 7.65 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 7.00 Total: 5.56 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -9.56 Total: -120.49 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -63.57 0.62 -62.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687713340.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.138 kcal (2) G-P(sol) polarization free energy of solvation -63.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds