Wall clock time and date at job start Mon Mar 30 2020 02:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47317 * 2 1 4 4 C 1.53005 * 109.46786 * 240.00367 * 2 1 3 5 5 C 1.50700 * 109.47269 * 65.00207 * 4 2 1 6 6 H 1.07998 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00100 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99926 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99806 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46843 * 90.00638 * 9 7 5 11 11 H 1.48500 * 109.47185 * 210.00168 * 9 7 5 12 12 H 1.48494 * 109.47352 * 330.00460 * 9 7 5 13 13 N 1.46500 * 109.47249 * 120.00240 * 2 1 3 14 14 C 1.35230 * 126.44457 * 60.00103 * 13 2 1 15 15 C 1.35834 * 107.19335 * 179.97438 * 14 13 2 16 16 N 1.32866 * 108.39873 * 359.77637 * 15 14 13 17 17 C 1.31896 * 109.08222 * 0.36992 * 16 15 14 18 18 C 1.46543 * 125.89137 * 179.88982 * 17 16 15 19 19 O 1.21333 * 119.99921 * 179.41179 * 18 17 16 20 20 H 1.09000 * 109.46861 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47093 * 299.99550 * 1 2 3 22 22 H 1.09003 * 109.47109 * 59.99707 * 1 2 3 23 23 H 1.09003 * 109.46919 * 184.99592 * 4 2 1 24 24 H 1.08997 * 109.47252 * 304.99819 * 4 2 1 25 25 H 0.97002 * 119.99498 * 179.97438 * 8 7 5 26 26 H 1.07993 * 126.40392 * 359.96451 * 14 13 2 27 27 H 1.08007 * 125.80229 * 179.97438 * 15 14 13 28 28 H 1.08002 * 120.00318 * 359.69771 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9922 -0.4020 -3.7284 8 7 1.6439 0.2770 -4.7995 9 14 2.9625 -1.9887 -3.9030 10 1 2.0232 -3.1330 -4.0193 11 1 3.8106 -1.9190 -5.1200 12 1 3.8249 -2.1756 -2.7087 13 7 2.0184 -0.6907 1.1961 14 6 1.7734 -1.9759 1.5380 15 6 2.4124 -2.2074 2.7140 16 7 3.0364 -1.0925 3.0788 17 6 2.8090 -0.1566 2.1777 18 6 3.3198 1.2164 2.2174 19 8 3.0514 1.9897 1.3217 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 3.1263 -0.7994 -1.2058 24 1 1.6053 -1.7197 -1.2953 25 1 1.8911 -0.0459 -5.6801 26 1 1.1803 -2.6855 0.9803 27 1 2.4157 -3.1403 3.2583 28 1 3.9389 1.5387 3.0416 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695831471.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:53 Heat of formation + Delta-G solvation = -0.034986 kcal Electronic energy + Delta-G solvation = -13484.434451 eV Core-core repulsion = 11114.909870 eV Total energy + Delta-G solvation = -2369.524580 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.22949 -39.80100 -37.43659 -34.71947 -32.15470 -31.02127 -29.50483 -26.09049 -25.27969 -23.20248 -21.90679 -20.63118 -19.22288 -17.83236 -16.96940 -16.78138 -16.29894 -16.07681 -15.48629 -15.07963 -14.75713 -14.65599 -14.42722 -13.90115 -13.34465 -13.10693 -12.83380 -12.30217 -12.19559 -11.88503 -11.59671 -11.22123 -10.93793 -10.81861 -10.68500 -9.50060 -8.36487 -6.42448 0.06504 1.29063 1.32677 1.42263 1.52678 1.72013 2.28045 2.31639 2.97570 3.10142 3.70502 3.77350 4.04901 4.22559 4.34250 4.45903 4.52161 4.71179 4.79593 4.99199 5.06461 5.15042 5.44463 5.46177 5.68887 5.97847 6.15922 6.26521 6.63451 6.92388 7.21657 8.79242 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.035747 B = 0.010139 C = 0.009282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.084907 B = 2761.016436 C = 3015.903085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.124 3.876 3 H 0.104 0.896 4 C -0.003 4.003 5 C -0.527 4.527 6 H 0.045 0.955 7 C 0.015 3.985 8 N -0.941 5.941 9 Si 0.944 3.056 10 H -0.257 1.257 11 H -0.283 1.283 12 H -0.259 1.259 13 N -0.409 5.409 14 C -0.023 4.023 15 C -0.037 4.037 16 N -0.444 5.444 17 C 0.045 3.955 18 C 0.433 3.567 19 O -0.495 6.495 20 H 0.072 0.928 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.008 0.992 24 H 0.033 0.967 25 H 0.269 0.731 26 H 0.199 0.801 27 H 0.209 0.791 28 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 -5.692 14.238 15.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.023 3.977 3 H 0.122 0.878 4 C -0.041 4.041 5 C -0.565 4.565 6 H 0.063 0.937 7 C -0.184 4.184 8 N -0.581 5.581 9 Si 0.768 3.232 10 H -0.182 1.182 11 H -0.209 1.209 12 H -0.183 1.183 13 N -0.088 5.088 14 C -0.164 4.164 15 C -0.192 4.192 16 N -0.167 5.167 17 C -0.207 4.207 18 C 0.293 3.707 19 O -0.366 6.366 20 H 0.091 0.909 21 H 0.080 0.920 22 H 0.089 0.911 23 H 0.026 0.974 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.215 0.785 27 H 0.226 0.774 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.281 -4.928 14.104 14.995 hybrid contribution -0.189 -0.652 -1.408 1.564 sum 1.091 -5.581 12.696 13.911 Atomic orbital electron populations 1.21934 0.91862 1.03317 1.02372 1.21897 0.96702 0.97726 0.81414 0.87843 1.19728 0.95855 0.96453 0.92067 1.21102 1.35859 1.09190 0.90364 0.93708 1.25849 0.96415 1.00733 0.95356 1.70030 1.47983 1.41241 0.98841 0.85752 0.79458 0.79940 0.78074 1.18192 1.20875 1.18340 1.46028 1.34155 1.10877 1.17757 1.23571 1.05675 0.86988 1.00152 1.22999 1.00945 0.98842 0.96405 1.70147 1.20674 1.00338 1.25577 1.24567 1.05130 1.00410 0.90627 1.23840 0.77351 0.80959 0.88595 1.90585 1.51921 1.54723 1.39354 0.90924 0.92049 0.91072 0.97383 0.94828 0.92206 0.78453 0.77403 0.80020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.05 71.98 0.65 -4.11 15 2 C 0.12 4.90 2.92 44.99 0.13 5.03 15 3 H 0.10 4.58 5.35 -2.39 -0.01 4.57 15 4 C 0.00 -0.14 3.52 29.85 0.10 -0.03 15 5 C -0.53 -29.29 8.96 25.60 0.23 -29.06 15 6 H 0.04 2.73 7.30 -2.91 -0.02 2.71 15 7 C 0.01 0.84 5.47 84.65 0.46 1.30 15 8 N -0.94 -57.54 13.96 21.45 0.30 -57.24 15 9 Si 0.94 43.29 27.47 68.60 1.88 45.17 15 10 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 15 12 H -0.26 -11.45 6.54 99.48 0.65 -10.80 15 13 N -0.41 -13.93 2.62 -494.49 -1.30 -15.22 15 14 C -0.02 -0.64 10.63 83.61 0.89 0.25 15 15 C -0.04 -0.94 11.85 83.98 0.99 0.06 15 16 N -0.44 -13.21 11.27 -189.94 -2.14 -15.35 15 17 C 0.05 1.45 7.82 135.87 1.06 2.51 15 18 C 0.43 12.25 11.76 69.99 0.82 13.07 15 19 O -0.49 -18.14 15.18 -3.19 -0.05 -18.19 15 20 H 0.07 2.23 7.95 -2.39 -0.02 2.21 15 21 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 22 H 0.07 2.77 6.95 -2.39 -0.02 2.76 15 23 H 0.01 0.38 7.20 -2.39 -0.02 0.37 15 24 H 0.03 1.43 7.51 -2.39 -0.02 1.42 15 25 H 0.27 15.33 8.31 -92.71 -0.77 14.56 15 26 H 0.20 4.45 8.06 -2.91 -0.02 4.43 15 27 H 0.21 3.61 8.06 -2.91 -0.02 3.59 15 28 H 0.18 3.11 8.06 -2.91 -0.02 3.09 15 Total: -1.00 -68.68 246.11 5.15 -63.53 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.10 Total: 8.29 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 5.35 Total: -10.99 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -3.14 Total: -87.81 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.05 Total: -18.19 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Total: -68.68 5.15 -63.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695831471.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.493 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds