Wall clock time and date at job start Mon Mar 30 2020 02:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99754 * 2 1 3 5 5 C 1.50701 * 109.47211 * 295.00691 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 N 1.46500 * 109.47480 * 240.00148 * 2 1 3 14 14 C 1.35233 * 126.44596 * 299.68958 * 13 2 1 15 15 C 1.35831 * 107.19469 * 179.84343 * 14 13 2 16 16 N 1.32866 * 108.39926 * 0.42597 * 15 14 13 17 17 C 1.31892 * 109.07967 * 359.72999 * 16 15 14 18 18 C 1.46552 * 125.88763 * 180.02562 * 17 16 15 19 19 O 1.21331 * 120.00191 * 359.97438 * 18 17 16 20 20 H 1.09003 * 109.47367 * 300.00045 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99991 * 1 2 3 22 22 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47211 * 174.99718 * 4 2 1 24 24 H 1.09007 * 109.46376 * 55.00260 * 4 2 1 25 25 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 26 26 H 1.07998 * 126.39959 * 359.97438 * 14 13 2 27 27 H 1.08003 * 125.80178 * 180.15986 * 15 14 13 28 28 H 1.08003 * 119.99942 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9976 -0.3990 3.7280 8 7 2.6807 -1.5161 3.8509 9 14 1.5100 0.5697 5.2489 10 1 0.1844 0.1032 5.7291 11 1 2.5234 0.3619 6.3142 12 1 1.4343 2.0141 4.9126 13 7 2.0183 -0.6906 -1.1962 14 6 1.7782 -1.9775 -1.5352 15 6 2.4119 -2.2070 -2.7145 16 7 3.0317 -1.0906 -3.0818 17 6 2.8085 -0.1563 -2.1780 18 6 3.3181 1.2172 -2.2184 19 8 4.0134 1.5793 -3.1444 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1263 -0.7995 1.2056 24 1 1.6053 -1.7198 1.2951 25 1 2.9317 -1.8367 4.7312 26 1 1.1904 -2.6890 -0.9743 27 1 2.4154 -3.1399 -3.2587 28 1 3.0748 1.9070 -1.4237 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695831473.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:55 Heat of formation + Delta-G solvation = 15.164409 kcal Electronic energy + Delta-G solvation = -13266.326356 eV Core-core repulsion = 10897.460871 eV Total energy + Delta-G solvation = -2368.865485 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.86528 -38.41064 -35.86158 -32.85538 -30.40180 -29.74114 -27.32957 -24.64739 -23.99193 -22.06581 -20.23242 -19.15244 -17.38014 -16.33335 -15.51590 -15.27089 -14.78756 -14.58055 -13.84508 -13.51158 -13.38417 -13.25828 -12.56289 -12.18949 -11.77990 -11.16905 -11.12089 -10.79738 -10.49250 -10.21203 -9.90839 -9.74329 -9.46652 -9.14408 -8.62557 -8.18976 -6.26520 -4.32824 1.35923 2.79506 3.06673 3.16861 3.25204 3.26714 3.62824 4.16397 4.25696 5.03914 5.09490 5.16943 5.36172 5.53434 5.61840 5.73425 5.81638 6.11362 6.30464 6.47662 6.61110 6.91586 7.18391 7.30483 7.39597 7.47257 7.68874 8.01025 8.28427 8.71507 9.33544 10.84445 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.041591 B = 0.008162 C = 0.007674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.055018 B = 3429.727170 C = 3647.698199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.117 3.883 3 H 0.095 0.905 4 C 0.021 3.979 5 C -0.529 4.529 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.400 5.400 14 C -0.002 4.002 15 C -0.048 4.048 16 N -0.430 5.430 17 C 0.068 3.932 18 C 0.427 3.573 19 O -0.446 6.446 20 H 0.089 0.911 21 H 0.044 0.956 22 H 0.058 0.942 23 H 0.025 0.975 24 H 0.027 0.973 25 H 0.265 0.735 26 H 0.178 0.822 27 H 0.172 0.828 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.392 1.467 -5.623 7.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 H 0.113 0.887 4 C -0.017 4.017 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.081 5.081 14 C -0.144 4.144 15 C -0.204 4.204 16 N -0.152 5.152 17 C -0.186 4.186 18 C 0.283 3.717 19 O -0.313 6.313 20 H 0.108 0.892 21 H 0.063 0.937 22 H 0.077 0.923 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.195 0.805 27 H 0.189 0.811 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.461 1.889 -6.571 7.663 hybrid contribution -0.799 -0.024 1.839 2.006 sum -4.260 1.866 -4.731 6.634 Atomic orbital electron populations 1.22054 0.93374 1.02769 1.02286 1.22233 0.95608 0.97270 0.83240 0.88698 1.19473 0.97224 0.96136 0.88856 1.20972 1.36562 1.08974 0.90263 0.91956 1.24995 0.94662 0.95012 0.99333 1.69952 1.37552 1.20916 1.24131 0.86508 0.78363 0.80316 0.82360 1.20464 1.21059 1.19653 1.46043 1.33945 1.10090 1.18015 1.22954 1.05097 0.87235 0.99160 1.22426 1.02867 0.98222 0.96844 1.70204 1.19562 0.99742 1.25724 1.23998 1.04835 0.99321 0.90428 1.22814 0.76441 0.84732 0.87759 1.90548 1.28629 1.77352 1.34786 0.89224 0.93699 0.92256 0.95644 0.95442 0.92549 0.80464 0.81112 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.06 37.15 0.34 -1.90 15 2 C 0.12 2.03 2.96 -67.93 -0.20 1.83 15 3 H 0.09 1.52 6.72 -51.92 -0.35 1.17 15 4 C 0.02 0.46 4.44 -27.88 -0.12 0.34 15 5 C -0.53 -12.93 8.41 -34.44 -0.29 -13.22 15 6 H 0.06 1.43 7.06 -52.49 -0.37 1.06 15 7 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 8 N -0.89 -24.60 13.29 55.43 0.74 -23.86 15 9 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 15 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 13 N -0.40 -6.89 2.62 -107.65 -0.28 -7.17 15 14 C 0.00 -0.03 10.63 -16.92 -0.18 -0.21 15 15 C -0.05 -0.78 11.85 -17.97 -0.21 -1.00 15 16 N -0.43 -8.24 11.23 -11.39 -0.13 -8.36 15 17 C 0.07 1.22 7.77 -154.46 -1.20 0.02 15 18 C 0.43 6.87 11.30 34.08 0.39 7.26 15 19 O -0.45 -8.43 17.90 5.51 0.10 -8.33 15 20 H 0.09 1.40 6.95 -51.93 -0.36 1.04 15 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.06 0.89 7.95 -51.93 -0.41 0.47 15 23 H 0.03 0.64 8.14 -51.93 -0.42 0.21 15 24 H 0.03 0.65 8.08 -51.93 -0.42 0.23 15 25 H 0.26 6.97 8.31 -40.82 -0.34 6.64 15 26 H 0.18 2.43 8.06 -52.49 -0.42 2.00 15 27 H 0.17 2.19 8.06 -52.48 -0.42 1.77 15 28 H 0.12 1.40 7.02 -52.48 -0.37 1.03 15 LS Contribution 252.25 15.07 3.80 3.80 Total: -1.00 -30.29 252.25 -5.48 -35.77 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -3.11 Total: -1.22 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.58 Total: -5.35 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.33 Total: -39.40 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.10 Total: -8.33 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.29 -5.48 -35.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695831473.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.938 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds