Wall clock time and date at job start Mon Mar 30 2020 02:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99754 * 2 1 3 5 5 C 1.50701 * 109.47211 * 295.00691 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 N 1.46500 * 109.47480 * 240.00148 * 2 1 3 14 14 C 1.35233 * 126.44596 * 299.68958 * 13 2 1 15 15 C 1.35831 * 107.19469 * 179.84343 * 14 13 2 16 16 N 1.32866 * 108.39926 * 0.42597 * 15 14 13 17 17 C 1.31892 * 109.07967 * 359.72999 * 16 15 14 18 18 C 1.46552 * 125.88763 * 180.02562 * 17 16 15 19 19 O 1.21331 * 120.00191 * 359.97438 * 18 17 16 20 20 H 1.09003 * 109.47367 * 300.00045 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99991 * 1 2 3 22 22 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47211 * 174.99718 * 4 2 1 24 24 H 1.09007 * 109.46376 * 55.00260 * 4 2 1 25 25 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 26 26 H 1.07998 * 126.39959 * 359.97438 * 14 13 2 27 27 H 1.08003 * 125.80178 * 180.15986 * 15 14 13 28 28 H 1.08003 * 119.99942 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9976 -0.3990 3.7280 8 7 2.6807 -1.5161 3.8509 9 14 1.5100 0.5697 5.2489 10 1 0.1844 0.1032 5.7291 11 1 2.5234 0.3619 6.3142 12 1 1.4343 2.0141 4.9126 13 7 2.0183 -0.6906 -1.1962 14 6 1.7782 -1.9775 -1.5352 15 6 2.4119 -2.2070 -2.7145 16 7 3.0317 -1.0906 -3.0818 17 6 2.8085 -0.1563 -2.1780 18 6 3.3181 1.2172 -2.2184 19 8 4.0134 1.5793 -3.1444 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1263 -0.7995 1.2056 24 1 1.6053 -1.7198 1.2951 25 1 2.9317 -1.8367 4.7312 26 1 1.1904 -2.6890 -0.9743 27 1 2.4154 -3.1399 -3.2587 28 1 3.0748 1.9070 -1.4237 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695831473.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:55 Heat of formation + Delta-G solvation = -3.374134 kcal Electronic energy + Delta-G solvation = -13267.130247 eV Core-core repulsion = 10897.460871 eV Total energy + Delta-G solvation = -2369.669377 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.18679 -39.74938 -37.35685 -34.68240 -31.89902 -31.04194 -28.95433 -26.05624 -25.53427 -23.54596 -21.62194 -20.49230 -18.88209 -18.04886 -16.87755 -16.69378 -16.36193 -16.03762 -15.25717 -14.90446 -14.71894 -14.62141 -14.21348 -13.75641 -13.17795 -12.84865 -12.75711 -12.35601 -12.10379 -11.81128 -11.42623 -11.16818 -11.05441 -10.63655 -10.55542 -9.49066 -8.22299 -6.33435 0.05947 1.45082 1.46494 1.51939 1.56483 1.75079 2.31119 2.42764 2.98945 3.14440 3.73650 3.85179 4.16219 4.22305 4.40129 4.43851 4.55644 4.86679 4.95353 5.20152 5.28037 5.36911 5.51192 5.67813 5.73026 6.00424 6.15632 6.23500 6.81702 6.97696 7.37345 8.89697 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.041591 B = 0.008162 C = 0.007674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.055018 B = 3429.727170 C = 3647.698199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.126 3.874 3 H 0.114 0.886 4 C 0.029 3.971 5 C -0.530 4.530 6 H 0.080 0.920 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.257 1.257 13 N -0.402 5.402 14 C -0.007 4.007 15 C -0.050 4.050 16 N -0.467 5.467 17 C 0.049 3.951 18 C 0.433 3.567 19 O -0.479 6.479 20 H 0.087 0.913 21 H 0.068 0.932 22 H 0.058 0.942 23 H -0.011 1.011 24 H 0.006 0.994 25 H 0.263 0.737 26 H 0.198 0.802 27 H 0.200 0.800 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.692 2.553 -5.479 8.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 H 0.132 0.868 4 C -0.009 4.009 5 C -0.569 4.569 6 H 0.098 0.902 7 C -0.193 4.193 8 N -0.573 5.573 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.219 1.219 12 H -0.181 1.181 13 N -0.082 5.082 14 C -0.148 4.148 15 C -0.205 4.205 16 N -0.189 5.189 17 C -0.204 4.204 18 C 0.291 3.709 19 O -0.349 6.349 20 H 0.106 0.894 21 H 0.087 0.913 22 H 0.077 0.923 23 H 0.007 0.993 24 H 0.025 0.975 25 H 0.071 0.929 26 H 0.215 0.785 27 H 0.217 0.783 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.780 2.986 -6.437 8.556 hybrid contribution -0.389 -0.434 1.757 1.851 sum -5.170 2.552 -4.680 7.426 Atomic orbital electron populations 1.21996 0.91340 1.03137 1.03330 1.22054 0.97053 0.97243 0.81112 0.86829 1.19267 0.94802 0.95649 0.91173 1.21459 1.35363 1.09275 0.90771 0.90172 1.25886 0.94857 0.95870 1.02720 1.70094 1.39601 1.22973 1.24586 0.85482 0.77736 0.79604 0.78461 1.19924 1.21883 1.18074 1.46020 1.33965 1.10515 1.17749 1.23393 1.05010 0.87198 0.99240 1.22960 1.01920 0.98594 0.97037 1.70215 1.20747 1.01014 1.26940 1.24456 1.05135 1.00207 0.90559 1.23505 0.75055 0.84416 0.87962 1.90538 1.30259 1.77679 1.36384 0.89436 0.91268 0.92328 0.99302 0.97532 0.92853 0.78545 0.78296 0.81990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.06 71.98 0.65 -3.21 15 2 C 0.13 4.11 2.96 44.99 0.13 4.24 15 3 H 0.11 3.27 6.72 -2.38 -0.02 3.25 15 4 C 0.03 1.28 4.44 29.85 0.13 1.41 15 5 C -0.53 -25.25 8.41 25.60 0.22 -25.03 15 6 H 0.08 3.46 7.06 -2.91 -0.02 3.44 15 7 C 0.01 0.27 5.46 84.65 0.46 0.73 15 8 N -0.93 -52.35 13.29 21.45 0.28 -52.06 15 9 Si 0.96 39.76 29.54 68.60 2.03 41.79 15 10 H -0.27 -11.01 7.11 99.48 0.71 -10.30 15 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 15 12 H -0.26 -9.91 7.11 99.48 0.71 -9.20 15 13 N -0.40 -13.18 2.62 -494.49 -1.30 -14.47 15 14 C -0.01 -0.20 10.63 83.61 0.89 0.69 15 15 C -0.05 -1.57 11.85 83.98 0.99 -0.58 15 16 N -0.47 -17.48 11.23 -189.94 -2.13 -19.61 15 17 C 0.05 1.72 7.77 135.88 1.06 2.77 15 18 C 0.43 13.21 11.30 69.99 0.79 14.00 15 19 O -0.48 -17.73 17.90 -3.19 -0.06 -17.79 15 20 H 0.09 2.47 6.95 -2.39 -0.02 2.45 15 21 H 0.07 1.59 8.14 -2.38 -0.02 1.57 15 22 H 0.06 1.61 7.95 -2.39 -0.02 1.59 15 23 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 15 24 H 0.01 0.31 8.08 -2.38 -0.02 0.29 15 25 H 0.26 14.08 8.31 -92.71 -0.77 13.31 15 26 H 0.20 5.07 8.06 -2.91 -0.02 5.05 15 27 H 0.20 4.73 8.06 -2.91 -0.02 4.70 15 28 H 0.16 3.38 7.02 -2.91 -0.02 3.36 15 Total: -1.00 -65.18 252.25 5.30 -59.88 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 1.15 Total: 7.25 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.33 Total: -4.98 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -3.14 Total: -86.15 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.06 Total: -17.79 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -65.18 5.30 -59.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695831473.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.505 kcal (2) G-P(sol) polarization free energy of solvation -65.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds