Wall clock time and date at job start Mon Mar 30 2020 02:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35915 * 116.99546 * 2 1 4 4 C 1.38746 * 120.47501 * 359.96897 * 3 2 1 5 5 N 1.31814 * 120.68460 * 180.02562 * 4 3 2 6 6 C 1.31884 * 121.77665 * 359.73184 * 5 4 3 7 7 C 1.38213 * 120.88633 * 0.54088 * 6 5 4 8 8 C 1.50700 * 120.38513 * 179.75383 * 7 6 5 9 9 N 1.46498 * 109.46769 * 269.71421 * 8 7 6 10 10 C 1.36943 * 119.99752 * 179.72432 * 9 8 7 11 11 H 1.08002 * 119.99793 * 0.27665 * 10 9 8 12 12 C 1.38811 * 120.00012 * 180.27737 * 10 9 8 13 13 N 1.31624 * 119.99698 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00072 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47213 * 60.00246 * 14 12 10 16 16 H 1.48502 * 109.47317 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47081 * 299.99875 * 14 12 10 18 18 C 1.38576 * 119.22186 * 359.46924 * 7 6 5 19 19 H 1.09002 * 109.46488 * 180.02562 * 1 2 3 20 20 H 1.08991 * 109.47317 * 300.00189 * 1 2 3 21 21 H 1.08995 * 109.47149 * 60.00854 * 1 2 3 22 22 H 1.08004 * 119.66300 * 0.02562 * 4 3 2 23 23 H 1.08000 * 119.55539 * 180.26930 * 6 5 4 24 24 H 1.09004 * 109.47210 * 149.71779 * 8 7 6 25 25 H 1.08994 * 109.47121 * 29.71748 * 8 7 6 26 26 H 0.97001 * 120.00384 * 0.02562 * 9 8 7 27 27 H 0.96999 * 119.99739 * 180.02562 * 13 12 10 28 28 H 1.08002 * 120.80790 * 180.23613 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2999 2.3808 -0.0006 5 7 1.8940 3.5575 -0.0012 6 6 3.2078 3.6723 0.0042 7 6 4.0178 2.5524 -0.0006 8 6 5.5179 2.6967 -0.0001 9 7 6.0045 2.7425 -1.3811 10 6 7.3443 2.8769 -1.6308 11 1 8.0425 2.9446 -0.8097 12 6 7.8048 2.9261 -2.9394 13 7 6.9538 2.8441 -3.9401 14 14 9.6324 3.1087 -3.2801 15 1 10.3639 1.9614 -2.6852 16 1 9.8622 3.1360 -4.7469 17 1 10.1239 4.3745 -2.6789 18 6 3.4344 1.2955 0.0000 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 0.2212 2.3268 -0.0007 23 1 3.6567 4.6545 0.0080 24 1 5.9646 1.8459 0.5145 25 1 5.7941 3.6176 0.5133 26 1 5.3774 2.6820 -2.1186 27 1 7.2756 2.8781 -4.8545 28 1 4.0429 0.4032 0.0001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699778312.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:16 Heat of formation + Delta-G solvation = -13.398272 kcal Electronic energy + Delta-G solvation = -12912.278375 eV Core-core repulsion = 10542.174319 eV Total energy + Delta-G solvation = -2370.104056 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.64116 -39.20163 -36.76302 -34.24985 -32.51843 -31.27057 -28.49662 -27.28040 -24.87077 -24.46010 -22.45163 -19.44779 -18.67769 -18.02185 -17.62740 -16.84429 -16.63648 -15.61168 -15.28342 -15.22394 -14.42562 -14.16937 -14.06974 -13.90572 -13.15122 -12.84637 -12.69228 -12.64572 -12.38674 -12.14837 -11.89849 -10.98915 -10.55300 -10.47679 -9.44368 -9.04821 -7.95385 -5.26532 0.06221 0.25413 1.49036 1.52586 1.58617 2.22252 2.55238 2.75842 3.38208 3.50213 3.63865 3.84855 4.03522 4.19639 4.26305 4.28848 4.41259 4.47402 4.75743 4.85108 4.88916 4.95979 5.36809 5.48586 5.49908 6.23668 6.24735 6.90148 7.31379 8.02180 8.27418 9.27922 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.055504 B = 0.006540 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.346577 B = 4280.644906 C = 4449.583558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.075 3.925 4 C 0.013 3.987 5 N -0.467 5.467 6 C 0.065 3.935 7 C -0.097 4.097 8 C 0.193 3.807 9 N -0.740 5.740 10 C -0.249 4.249 11 H 0.083 0.917 12 C -0.075 4.075 13 N -0.971 5.971 14 Si 0.979 3.021 15 H -0.276 1.276 16 H -0.297 1.297 17 H -0.275 1.275 18 C -0.108 4.108 19 H 0.124 0.876 20 H 0.073 0.927 21 H 0.066 0.934 22 H 0.188 0.812 23 H 0.163 0.837 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.372 0.628 27 H 0.252 0.748 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.411 -3.918 9.519 16.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.028 3.972 4 C -0.145 4.145 5 N -0.176 5.176 6 C -0.092 4.092 7 C -0.100 4.100 8 C 0.066 3.934 9 N -0.383 5.383 10 C -0.381 4.381 11 H 0.101 0.899 12 C -0.267 4.267 13 N -0.621 5.621 14 Si 0.807 3.193 15 H -0.202 1.202 16 H -0.223 1.223 17 H -0.201 1.201 18 C -0.135 4.135 19 H 0.142 0.858 20 H 0.091 0.909 21 H 0.084 0.916 22 H 0.205 0.795 23 H 0.180 0.820 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.204 0.796 27 H 0.060 0.940 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.673 -3.361 9.581 16.238 hybrid contribution 1.074 -0.585 -0.773 1.447 sum -11.599 -3.946 8.807 15.089 Atomic orbital electron populations 1.23471 0.75764 1.06184 1.02705 1.86078 1.24034 1.25411 1.88427 1.20042 0.92702 0.86529 0.97958 1.23331 1.01718 0.86574 1.02922 1.67575 1.11967 1.27344 1.10683 1.22701 0.88646 0.99142 0.98736 1.20907 0.97469 0.93288 0.98320 1.19691 0.86981 0.99648 0.87043 1.42524 1.04910 1.88839 1.02044 1.19663 0.84946 1.41172 0.92281 0.89923 1.25642 1.02290 1.03345 0.95447 1.69841 1.34998 1.58967 0.98339 0.85138 0.79599 0.78365 0.76189 1.20193 1.22302 1.20106 1.20986 0.92477 0.98523 1.01564 0.85753 0.90868 0.91565 0.79497 0.81977 0.94326 0.93631 0.79615 0.93959 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.82 113.37 1.11 1.29 15 2 O -0.33 -8.28 10.51 -92.59 -0.97 -9.25 15 3 C 0.08 2.22 6.71 22.60 0.15 2.37 15 4 C 0.01 0.36 10.22 84.82 0.87 1.23 15 5 N -0.47 -15.16 10.36 -195.43 -2.02 -17.18 15 6 C 0.07 2.24 10.85 84.68 0.92 3.16 15 7 C -0.10 -3.51 5.26 -19.79 -0.10 -3.62 15 8 C 0.19 7.81 6.41 85.63 0.55 8.36 15 9 N -0.74 -38.36 5.59 -347.18 -1.94 -40.31 15 10 C -0.25 -13.96 9.99 84.03 0.84 -13.12 15 11 H 0.08 4.35 7.83 -2.91 -0.02 4.33 15 12 C -0.08 -4.34 5.50 84.86 0.47 -3.87 15 13 N -0.97 -60.36 13.06 21.65 0.28 -60.07 15 14 Si 0.98 46.14 29.55 68.60 2.03 48.17 15 15 H -0.28 -12.46 7.11 99.48 0.71 -11.76 15 16 H -0.30 -14.14 7.11 99.48 0.71 -13.44 15 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 15 18 C -0.11 -3.67 9.81 22.56 0.22 -3.44 15 19 H 0.12 1.19 8.14 -2.39 -0.02 1.17 15 20 H 0.07 0.81 7.68 -2.39 -0.02 0.79 15 21 H 0.07 0.85 7.68 -2.39 -0.02 0.83 15 22 H 0.19 3.64 6.32 -2.91 -0.02 3.62 15 23 H 0.16 5.24 8.06 -2.91 -0.02 5.21 15 24 H 0.04 1.52 8.09 -2.38 -0.02 1.50 15 25 H 0.05 1.76 8.09 -2.39 -0.02 1.74 15 26 H 0.37 20.97 7.66 -92.71 -0.71 20.26 15 27 H 0.25 15.16 8.31 -92.71 -0.77 14.39 15 28 H 0.14 4.64 8.06 -2.91 -0.02 4.62 15 Total: -1.00 -67.57 250.89 2.85 -64.72 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.46 Total: 21.57 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 5.02 Total: -7.65 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -3.68 Total: -117.56 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.97 Total: -9.25 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -67.57 2.85 -64.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699778312.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.323 kcal (2) G-P(sol) polarization free energy of solvation -67.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds