Wall clock time and date at job start Mon Mar 30 2020 02:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47685 * 2 1 4 4 C 1.53001 * 109.46940 * 120.00392 * 2 1 3 5 5 C 1.50700 * 109.47251 * 294.99510 * 4 2 1 6 6 H 1.08006 * 119.99318 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00561 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99352 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00231 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46940 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46822 * 120.00550 * 9 7 5 12 12 H 1.48502 * 109.46926 * 240.00168 * 9 7 5 13 13 N 1.46508 * 109.46890 * 239.99820 * 2 1 3 14 14 C 1.35898 * 126.06613 * 299.97376 * 13 2 1 15 15 N 1.30074 * 109.30575 * 180.02562 * 14 13 2 16 16 C 1.35965 * 108.89634 * 0.02562 * 15 14 13 17 17 C 1.46506 * 126.37477 * 179.73357 * 16 15 14 18 18 O 1.21339 * 120.00003 * 180.02562 * 17 16 15 19 19 C 1.35203 * 126.06419 * 120.00386 * 13 2 1 20 20 H 1.08996 * 109.46874 * 299.99789 * 1 2 3 21 21 H 1.09004 * 109.46920 * 59.99904 * 1 2 3 22 22 H 1.09004 * 109.47078 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47667 * 54.99602 * 4 2 1 24 24 H 1.08999 * 109.47371 * 174.99755 * 4 2 1 25 25 H 0.97011 * 119.99434 * 179.97438 * 8 7 5 26 26 H 1.07997 * 125.35199 * 0.02562 * 14 13 2 27 27 H 1.08003 * 119.99830 * 0.03065 * 17 16 15 28 28 H 1.08005 * 126.66825 * 359.97438 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4024 3.7283 8 7 2.6754 -1.5195 3.8511 9 14 1.4988 0.5628 5.2496 10 1 0.7425 1.7744 4.8434 11 1 0.6441 -0.2858 6.1184 12 1 2.7172 0.9665 5.9965 13 7 2.0183 -0.6907 -1.1962 14 6 1.7675 -1.9834 -1.5321 15 7 2.3598 -2.2581 -2.6571 16 6 3.0174 -1.1499 -3.0906 17 6 3.8145 -1.0357 -4.3145 18 8 4.3552 0.0149 -4.5906 19 6 2.7989 -0.1552 -2.1616 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6053 -1.7199 1.2952 24 1 3.1263 -0.7996 1.2056 25 1 2.9226 -1.8425 4.7318 26 1 1.1703 -2.6742 -0.9555 27 1 3.9209 -1.8866 -4.9710 28 1 3.1779 0.8555 -2.1978 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709977518.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:58 Heat of formation + Delta-G solvation = 8.412654 kcal Electronic energy + Delta-G solvation = -13042.356997 eV Core-core repulsion = 10673.198734 eV Total energy + Delta-G solvation = -2369.158263 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.75550 -38.39584 -35.72337 -32.84283 -30.63228 -29.37546 -27.31514 -24.69504 -23.69043 -22.04971 -20.12923 -19.45048 -17.01248 -16.24228 -15.55919 -15.16363 -14.84468 -14.58888 -13.66774 -13.61343 -13.42616 -13.38549 -12.51022 -12.18229 -11.77649 -11.16346 -11.13506 -10.73818 -10.50269 -10.12958 -10.02568 -9.58546 -9.44992 -9.15703 -8.61604 -8.24146 -6.25174 -4.31006 1.54934 2.63896 3.14142 3.16973 3.26200 3.28503 3.67843 4.26335 4.50370 4.92694 5.11206 5.20638 5.25973 5.51852 5.56886 5.78116 5.88225 6.09618 6.33762 6.48431 6.61412 6.79153 7.23082 7.31855 7.41099 7.62786 7.72063 8.03588 8.23683 8.73451 9.35108 10.85864 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.056682 B = 0.006709 C = 0.006655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.862194 B = 4172.307082 C = 4206.636436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.121 3.879 3 H 0.093 0.907 4 C 0.020 3.980 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.897 3.103 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.431 5.431 14 C 0.192 3.808 15 N -0.465 5.465 16 C -0.138 4.138 17 C 0.434 3.566 18 O -0.484 6.484 19 C 0.039 3.961 20 H 0.088 0.912 21 H 0.043 0.957 22 H 0.059 0.941 23 H 0.028 0.972 24 H 0.024 0.976 25 H 0.264 0.736 26 H 0.206 0.794 27 H 0.105 0.895 28 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 1.134 -8.282 8.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.020 3.980 3 H 0.111 0.889 4 C -0.018 4.018 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.525 5.525 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.109 5.109 14 C -0.092 4.092 15 N -0.184 5.184 16 C -0.265 4.265 17 C 0.294 3.706 18 O -0.357 6.357 19 C -0.105 4.105 20 H 0.107 0.893 21 H 0.062 0.938 22 H 0.078 0.922 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.222 0.778 27 H 0.121 0.879 28 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.608 0.875 -8.586 9.016 hybrid contribution -0.261 1.037 1.568 1.898 sum -2.869 1.912 -7.019 7.820 Atomic orbital electron populations 1.22046 0.93515 1.02706 1.02216 1.22178 0.95433 0.97267 0.83124 0.88892 1.19469 0.97193 0.96149 0.88967 1.21009 1.36498 1.08853 0.90267 0.91995 1.25000 0.94733 0.95002 0.99335 1.69971 1.37739 1.20842 1.23985 0.86454 0.78423 0.79978 0.82696 1.19590 1.20800 1.20831 1.46104 1.34970 1.11500 1.18334 1.24995 1.03612 0.85546 0.95059 1.70588 1.11053 1.26385 1.10396 1.21941 1.10717 0.91943 1.01914 1.22710 0.74122 0.90355 0.83393 1.90519 1.40059 1.32571 1.72577 1.23206 0.96940 1.00423 0.89916 0.89318 0.93796 0.92226 0.95394 0.95726 0.92622 0.77760 0.87896 0.80257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.05 37.16 0.34 -1.97 15 2 C 0.12 2.15 2.98 -67.93 -0.20 1.95 15 3 H 0.09 1.61 8.07 -51.93 -0.42 1.19 15 4 C 0.02 0.45 4.44 -27.88 -0.12 0.33 15 5 C -0.53 -13.20 8.41 -34.44 -0.29 -13.49 15 6 H 0.06 1.47 7.06 -52.48 -0.37 1.10 15 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 8 N -0.89 -24.89 13.29 55.43 0.74 -24.16 15 9 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 15 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 12 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 13 N -0.43 -7.40 2.59 -110.89 -0.29 -7.68 15 14 C 0.19 3.24 11.59 -89.94 -1.04 2.20 15 15 N -0.47 -8.08 11.33 -10.90 -0.12 -8.20 15 16 C -0.14 -2.29 7.09 -82.85 -0.59 -2.88 15 17 C 0.43 6.28 11.75 34.06 0.40 6.68 15 18 O -0.48 -8.17 17.71 5.51 0.10 -8.07 15 19 C 0.04 0.64 11.28 -16.21 -0.18 0.46 15 20 H 0.09 1.45 6.95 -51.93 -0.36 1.08 15 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 22 H 0.06 0.90 7.94 -51.93 -0.41 0.49 15 23 H 0.03 0.67 8.07 -51.93 -0.42 0.25 15 24 H 0.02 0.63 8.14 -51.93 -0.42 0.21 15 25 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 26 H 0.21 3.00 8.06 -52.49 -0.42 2.58 15 27 H 0.10 1.14 8.06 -52.48 -0.42 0.72 15 28 H 0.18 2.60 8.06 -52.48 -0.42 2.18 15 LS Contribution 254.67 15.07 3.84 3.84 Total: -1.00 -29.30 254.67 -5.78 -35.08 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -3.23 Total: -0.67 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.79 Total: -5.18 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.33 Total: -40.05 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.10 Total: -8.07 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.30 -5.78 -35.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709977518.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.490 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds