Wall clock time and date at job start Mon Mar 30 2020 02:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47685 * 2 1 4 4 C 1.53001 * 109.46940 * 120.00392 * 2 1 3 5 5 C 1.50700 * 109.47251 * 294.99510 * 4 2 1 6 6 H 1.08006 * 119.99318 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00561 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99352 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00231 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46940 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46822 * 120.00550 * 9 7 5 12 12 H 1.48502 * 109.46926 * 240.00168 * 9 7 5 13 13 N 1.46508 * 109.46890 * 239.99820 * 2 1 3 14 14 C 1.35898 * 126.06613 * 299.97376 * 13 2 1 15 15 N 1.30074 * 109.30575 * 180.02562 * 14 13 2 16 16 C 1.35965 * 108.89634 * 0.02562 * 15 14 13 17 17 C 1.46506 * 126.37477 * 179.73357 * 16 15 14 18 18 O 1.21339 * 120.00003 * 180.02562 * 17 16 15 19 19 C 1.35203 * 126.06419 * 120.00386 * 13 2 1 20 20 H 1.08996 * 109.46874 * 299.99789 * 1 2 3 21 21 H 1.09004 * 109.46920 * 59.99904 * 1 2 3 22 22 H 1.09004 * 109.47078 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47667 * 54.99602 * 4 2 1 24 24 H 1.08999 * 109.47371 * 174.99755 * 4 2 1 25 25 H 0.97011 * 119.99434 * 179.97438 * 8 7 5 26 26 H 1.07997 * 125.35199 * 0.02562 * 14 13 2 27 27 H 1.08003 * 119.99830 * 0.03065 * 17 16 15 28 28 H 1.08005 * 126.66825 * 359.97438 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4024 3.7283 8 7 2.6754 -1.5195 3.8511 9 14 1.4988 0.5628 5.2496 10 1 0.7425 1.7744 4.8434 11 1 0.6441 -0.2858 6.1184 12 1 2.7172 0.9665 5.9965 13 7 2.0183 -0.6907 -1.1962 14 6 1.7675 -1.9834 -1.5321 15 7 2.3598 -2.2581 -2.6571 16 6 3.0174 -1.1499 -3.0906 17 6 3.8145 -1.0357 -4.3145 18 8 4.3552 0.0149 -4.5906 19 6 2.7989 -0.1552 -2.1616 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6053 -1.7199 1.2952 24 1 3.1263 -0.7996 1.2056 25 1 2.9226 -1.8425 4.7318 26 1 1.1703 -2.6742 -0.9555 27 1 3.9209 -1.8866 -4.9710 28 1 3.1779 0.8555 -2.1978 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709977518.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:58 Heat of formation + Delta-G solvation = -8.271930 kcal Electronic energy + Delta-G solvation = -13043.080494 eV Core-core repulsion = 10673.198734 eV Total energy + Delta-G solvation = -2369.881761 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.07129 -39.62989 -37.25137 -34.69315 -32.12195 -30.67350 -28.99635 -26.15033 -25.17293 -23.58649 -21.44695 -20.78020 -18.74777 -17.81748 -16.77385 -16.68605 -16.31072 -16.10845 -15.10343 -14.92414 -14.78597 -14.72194 -14.23907 -13.79352 -13.18796 -12.86932 -12.83043 -12.35709 -12.16361 -11.75909 -11.48991 -11.21817 -10.81331 -10.64497 -10.58764 -9.55150 -8.25273 -6.36534 0.32809 1.33335 1.41252 1.43518 1.54508 1.81250 2.40121 2.42389 3.10978 3.33615 3.67485 3.87035 3.99352 4.17045 4.28767 4.37719 4.70600 4.82119 4.92867 5.15227 5.24860 5.32997 5.43855 5.58657 5.70621 5.99855 6.16788 6.45320 6.78265 6.94178 7.33956 8.86922 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.056682 B = 0.006709 C = 0.006655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.862194 B = 4172.307082 C = 4206.636436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.133 3.867 3 H 0.101 0.899 4 C 0.028 3.972 5 C -0.532 4.532 6 H 0.076 0.924 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.963 3.037 10 H -0.256 1.256 11 H -0.281 1.281 12 H -0.285 1.285 13 N -0.436 5.436 14 C 0.183 3.817 15 N -0.475 5.475 16 C -0.149 4.149 17 C 0.444 3.556 18 O -0.509 6.509 19 C 0.029 3.971 20 H 0.083 0.917 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.010 0.990 24 H -0.013 1.013 25 H 0.264 0.736 26 H 0.220 0.780 27 H 0.147 0.853 28 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.753 2.010 -8.832 9.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.032 3.968 3 H 0.119 0.881 4 C -0.010 4.010 5 C -0.570 4.570 6 H 0.094 0.906 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.788 3.212 10 H -0.179 1.179 11 H -0.207 1.207 12 H -0.212 1.212 13 N -0.114 5.114 14 C -0.101 4.101 15 N -0.194 5.194 16 C -0.276 4.276 17 C 0.305 3.695 18 O -0.383 6.383 19 C -0.114 4.114 20 H 0.102 0.898 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.028 0.972 24 H 0.005 0.995 25 H 0.072 0.928 26 H 0.236 0.764 27 H 0.163 0.837 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.472 1.760 -9.158 9.951 hybrid contribution 0.034 0.726 1.685 1.835 sum -3.437 2.487 -7.474 8.594 Atomic orbital electron populations 1.21973 0.91461 1.03201 1.03078 1.21891 0.96887 0.96693 0.81356 0.88077 1.19266 0.94715 0.95761 0.91244 1.21468 1.35515 1.09109 0.90938 0.90614 1.25899 0.94874 0.95883 1.02719 1.70106 1.39591 1.22805 1.24582 0.85414 0.77915 0.79001 0.78831 1.17936 1.20689 1.21154 1.46038 1.35455 1.11703 1.18248 1.25377 1.03773 0.85748 0.95217 1.70591 1.11406 1.26756 1.10668 1.22440 1.10762 0.91641 1.02784 1.23200 0.72631 0.90904 0.82756 1.90518 1.40983 1.33896 1.72923 1.23601 0.96672 1.01363 0.89796 0.89795 0.91455 0.91992 0.97214 0.99476 0.92759 0.76413 0.83710 0.78691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.05 71.98 0.65 -3.44 15 2 C 0.13 4.60 2.98 44.99 0.13 4.74 15 3 H 0.10 3.34 8.07 -2.39 -0.02 3.32 15 4 C 0.03 1.28 4.44 29.85 0.13 1.41 15 5 C -0.53 -26.38 8.41 25.60 0.22 -26.17 15 6 H 0.08 3.48 7.06 -2.91 -0.02 3.45 15 7 C 0.00 0.26 5.46 84.65 0.46 0.72 15 8 N -0.93 -53.16 13.29 21.45 0.28 -52.87 15 9 Si 0.96 40.82 29.54 68.60 2.03 42.85 15 10 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 12 H -0.29 -12.15 7.11 99.48 0.71 -11.45 15 13 N -0.44 -14.53 2.59 -504.73 -1.30 -15.83 15 14 C 0.18 6.01 11.59 180.11 2.09 8.10 15 15 N -0.48 -15.89 11.33 -188.40 -2.14 -18.03 15 16 C -0.15 -4.73 7.09 40.57 0.29 -4.44 15 17 C 0.44 11.88 11.75 69.98 0.82 12.71 15 18 O -0.51 -16.32 17.71 -3.21 -0.06 -16.38 15 19 C 0.03 0.91 11.28 84.08 0.95 1.86 15 20 H 0.08 2.55 6.95 -2.39 -0.02 2.54 15 21 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 22 H 0.06 1.78 7.94 -2.38 -0.02 1.76 15 23 H 0.01 0.47 8.07 -2.39 -0.02 0.45 15 24 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 15 25 H 0.26 14.27 8.31 -92.70 -0.77 13.50 15 26 H 0.22 6.28 8.06 -2.91 -0.02 6.25 15 27 H 0.15 2.72 8.06 -2.91 -0.02 2.70 15 28 H 0.20 5.39 8.06 -2.91 -0.02 5.36 15 Total: -1.00 -62.10 254.67 5.70 -56.40 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.15 Total: 8.38 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 5.74 Total: -4.51 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -3.16 Total: -86.74 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.06 Total: -16.38 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -62.10 5.70 -56.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709977518.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.124 kcal (2) G-P(sol) polarization free energy of solvation -62.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds