Wall clock time and date at job start Mon Mar 30 2020 02:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30525 * 1 3 3 Si 1.86789 * 120.00314 * 2 1 4 4 H 1.48500 * 109.47050 * 90.00167 * 3 2 1 5 5 H 1.48501 * 109.47316 * 210.00445 * 3 2 1 6 6 H 1.48498 * 109.47401 * 330.00680 * 3 2 1 7 7 C 1.40465 * 119.99564 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.41023 * 120.00140 * 359.97438 * 7 2 1 10 10 O 1.21435 * 120.00226 * 0.02562 * 9 7 2 11 11 C 1.50706 * 119.99786 * 180.02562 * 9 7 2 12 12 C 1.52992 * 109.47120 * 300.00080 * 11 9 7 13 13 C 1.53006 * 109.47056 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.46974 * 0.02562 * 13 12 11 15 15 C 1.53002 * 109.47092 * 59.99832 * 14 13 12 16 16 C 1.52996 * 109.47343 * 299.99936 * 15 14 13 17 17 C 1.52997 * 109.47232 * 299.99757 * 14 13 12 18 18 C 1.52998 * 109.46895 * 60.00342 * 11 9 7 19 19 H 0.97001 * 119.99503 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47595 * 299.99948 * 12 11 9 21 21 H 1.09005 * 109.47280 * 60.00217 * 12 11 9 22 22 H 1.08998 * 109.46884 * 239.99972 * 13 12 11 23 23 H 1.09000 * 109.46866 * 120.00124 * 13 12 11 24 24 H 1.09002 * 109.47045 * 179.97438 * 14 13 12 25 25 H 1.09004 * 109.46930 * 179.97438 * 15 14 13 26 26 H 1.09000 * 109.47312 * 59.99880 * 15 14 13 27 27 H 1.09002 * 109.47087 * 240.00465 * 16 15 14 28 28 H 1.09000 * 109.47441 * 119.99911 * 16 15 14 29 29 H 1.08996 * 109.46952 * 180.02562 * 17 14 13 30 30 H 1.09001 * 109.46832 * 300.00199 * 17 14 13 31 31 H 1.08995 * 109.47040 * 299.99704 * 18 11 9 32 32 H 1.09006 * 109.47195 * 60.00175 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6176 0.0000 4 1 2.4868 2.0462 1.4001 5 1 3.5368 1.4400 -0.7001 6 1 1.4368 2.6526 -0.6999 7 6 2.0075 -1.2165 -0.0005 8 1 3.0875 -1.2166 -0.0010 9 6 1.3023 -2.4378 -0.0005 10 8 0.0880 -2.4378 -0.0005 11 6 2.0558 -3.7429 -0.0005 12 6 2.9354 -3.8240 -1.2497 13 6 3.7009 -5.1488 -1.2494 14 6 3.3311 -5.9511 -0.0003 15 6 1.8269 -6.2312 -0.0008 16 6 1.0614 -4.9065 -0.0012 17 6 3.7000 -5.1487 1.2491 18 6 2.9353 -3.8240 1.2487 19 1 -0.4849 0.8401 0.0004 20 1 2.3089 -3.7663 -2.1397 21 1 3.6438 -2.9955 -1.2497 22 1 4.7724 -4.9492 -1.2494 23 1 3.4377 -5.7206 -2.1392 24 1 3.8760 -6.8951 -0.0002 25 1 1.5635 -6.8032 0.8889 26 1 1.5640 -6.8029 -0.8909 27 1 0.4345 -4.8489 0.8886 28 1 0.4351 -4.8489 -0.8914 29 1 3.4369 -5.7205 2.1389 30 1 4.7716 -4.9492 1.2494 31 1 3.6436 -2.9956 1.2487 32 1 2.3086 -3.7663 2.1387 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710226379.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:01 Heat of formation + Delta-G solvation = -92.109174 kcal Electronic energy + Delta-G solvation = -14378.341519 eV Core-core repulsion = 12108.364646 eV Total energy + Delta-G solvation = -2269.976873 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.47400 -38.21292 -34.74929 -32.51377 -31.64790 -31.64080 -28.69215 -23.96294 -23.37850 -23.34015 -21.19298 -18.54090 -17.56967 -17.23909 -16.52842 -16.44414 -16.07653 -14.98004 -14.06310 -14.03667 -13.80696 -13.38290 -12.93503 -12.91154 -12.86110 -12.82809 -12.79827 -12.52692 -12.31053 -12.20724 -12.02633 -11.25043 -11.04921 -10.97272 -10.57843 -10.49950 -9.36273 -8.22678 -7.03729 1.33260 1.35136 1.51422 2.20485 2.22832 3.39828 3.77411 3.87157 3.89095 4.45810 4.51231 4.53073 4.55353 4.57792 4.61346 4.62967 4.69788 4.74053 4.84577 5.16998 5.20601 5.21975 5.26740 5.37580 5.45559 5.52023 5.53587 5.65965 5.68423 5.68677 6.02956 6.76683 6.90992 8.33690 8.57310 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.048267 B = 0.010575 C = 0.009734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.972296 B = 2647.238242 C = 2875.834258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.024 3.976 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.247 1.247 6 H -0.270 1.270 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.348 3.652 10 O -0.602 6.602 11 C -0.094 4.094 12 C -0.091 4.091 13 C -0.106 4.106 14 C -0.081 4.081 15 C -0.106 4.106 16 C -0.089 4.089 17 C -0.106 4.106 18 C -0.091 4.091 19 H 0.278 0.722 20 H 0.032 0.968 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.099 0.901 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.279 -7.784 0.000 12.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.194 4.194 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.170 1.170 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.102 0.898 9 C 0.246 3.754 10 O -0.495 6.495 11 C -0.095 4.095 12 C -0.128 4.128 13 C -0.143 4.143 14 C -0.099 4.099 15 C -0.144 4.144 16 C -0.127 4.127 17 C -0.143 4.143 18 C -0.128 4.128 19 H 0.088 0.912 20 H 0.051 0.949 21 H 0.077 0.923 22 H 0.097 0.903 23 H 0.087 0.913 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.540 -7.760 -0.004 12.298 hybrid contribution -0.429 1.142 0.010 1.220 sum 9.112 -6.619 0.006 11.262 Atomic orbital electron populations 1.70121 1.09895 1.29388 1.33070 1.27261 0.95400 1.05518 0.91220 0.85173 0.79192 0.75292 0.79723 1.18359 1.16992 1.19510 1.21251 0.95645 0.92721 1.48837 0.89826 1.20352 0.88408 0.90309 0.76315 1.90334 1.18064 1.90070 1.51069 1.20909 0.96291 0.95216 0.97069 1.21326 0.97499 0.98857 0.95162 1.21573 1.00023 0.94600 0.98096 1.21064 0.95219 0.99021 0.94636 1.21581 0.95489 0.95143 1.02152 1.21211 0.96843 0.95329 0.99294 1.21563 1.00037 0.94601 0.98089 1.21319 0.97509 0.98868 0.95152 0.91159 0.94904 0.92332 0.90270 0.91288 0.88295 0.91255 0.91261 0.95216 0.95211 0.91282 0.90272 0.92290 0.94907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.65 11.72 21.91 0.26 -48.39 16 2 C 0.02 1.35 5.50 85.43 0.47 1.82 16 3 Si 0.99 40.65 29.56 68.60 2.03 42.68 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 5 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 6 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.55 -31.47 8.19 23.50 0.19 -31.27 16 8 H 0.08 4.33 6.99 -2.91 -0.02 4.31 16 9 C 0.35 20.40 5.78 26.37 0.15 20.56 16 10 O -0.60 -41.08 14.51 -3.51 -0.05 -41.13 16 11 C -0.09 -4.22 0.60 -52.91 -0.03 -4.25 16 12 C -0.09 -3.52 4.81 30.59 0.15 -3.37 16 13 C -0.11 -2.95 5.71 30.60 0.17 -2.77 16 14 C -0.08 -2.12 3.19 -10.79 -0.03 -2.16 16 15 C -0.11 -3.22 5.71 30.59 0.17 -3.04 16 16 C -0.09 -3.80 4.28 30.61 0.13 -3.67 16 17 C -0.11 -2.94 5.71 30.58 0.17 -2.77 16 18 C -0.09 -3.51 4.81 30.58 0.15 -3.37 16 19 H 0.28 15.28 8.29 -92.71 -0.77 14.51 16 20 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.06 2.30 7.42 -2.38 -0.02 2.28 16 22 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.03 1.37 8.10 -2.39 -0.02 1.35 16 28 H 0.03 1.38 8.10 -2.39 -0.02 1.36 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 2.31 7.42 -2.39 -0.02 2.29 16 32 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -72.75 251.00 5.01 -67.73 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.08 Total: 13.40 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 1.70 Total: -34.30 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.26 Total: -48.39 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -0.05 Total: -41.13 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -72.75 5.01 -67.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710226379.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.375 kcal (2) G-P(sol) polarization free energy of solvation -72.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds