Wall clock time and date at job start Mon Mar 30 2020 02:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00300 * 2 1 4 4 H 1.48502 * 109.47029 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47386 * 119.99789 * 3 2 1 6 6 H 1.48501 * 109.47018 * 239.99858 * 3 2 1 7 7 C 1.37878 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99915 * 185.34878 * 7 2 1 9 9 C 1.50698 * 120.00305 * 5.34583 * 7 2 1 10 10 C 1.53002 * 115.54979 * 279.48942 * 9 7 2 11 11 N 1.46500 * 109.46990 * 294.87932 * 10 9 7 12 12 N 1.28706 * 125.67186 * 274.73527 * 11 10 9 13 13 C 1.30924 * 109.70778 * 179.86565 * 12 11 10 14 14 C 1.39906 * 108.25304 * 0.39453 * 13 12 11 15 15 N 1.40056 * 126.71678 * 179.74254 * 14 13 12 16 16 N 1.31849 * 106.57268 * 359.76803 * 14 13 12 17 17 C 1.52995 * 117.50044 * 133.77945 * 9 7 2 18 18 C 1.52995 * 60.00186 * 252.50957 * 17 9 7 19 19 H 0.97000 * 119.99496 * 354.99742 * 1 2 3 20 20 H 1.08995 * 109.47214 * 54.88228 * 10 9 7 21 21 H 1.09005 * 109.47303 * 174.88232 * 10 9 7 22 22 H 1.08008 * 125.87459 * 180.16210 * 13 12 11 23 23 H 0.96998 * 120.00115 * 180.02562 * 15 14 13 24 24 H 0.97007 * 119.99879 * 0.02562 * 15 14 13 25 25 H 1.09005 * 117.50075 * 359.97438 * 17 9 7 26 26 H 1.08995 * 117.50315 * 145.02348 * 17 9 7 27 27 H 1.09001 * 117.50172 * 252.50815 * 18 17 9 28 28 H 1.09006 * 117.51966 * 107.47845 * 18 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6962 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0809 -1.1961 0.0877 9 6 1.2559 -2.4964 -0.1205 10 6 0.6216 -3.0154 1.1715 11 7 1.6753 -3.3475 2.1337 12 7 2.3096 -4.4657 2.1958 13 6 3.1844 -4.4235 3.1691 14 6 3.0932 -3.1712 3.7862 15 7 3.8491 -2.7169 4.8742 16 7 2.1560 -2.5026 3.1436 17 6 1.7954 -3.5322 -1.1088 18 6 0.5116 -2.7644 -1.4301 19 1 -0.4849 0.8369 0.0733 20 1 -0.0259 -2.2465 1.5928 21 1 0.0333 -3.9071 0.9548 22 1 3.8577 -5.2199 3.4498 23 1 3.7042 -1.8250 5.2268 24 1 4.5177 -3.2943 5.2752 25 1 2.6916 -3.2715 -1.6719 26 1 1.6987 -4.5837 -0.8388 27 1 -0.4297 -3.3108 -1.3713 28 1 0.5631 -1.9985 -2.2041 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725249897.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:08 Heat of formation + Delta-G solvation = 133.239237 kcal Electronic energy + Delta-G solvation = -13574.445134 eV Core-core repulsion = 11242.992509 eV Total energy + Delta-G solvation = -2331.452625 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.31158 -36.76372 -34.42837 -31.96809 -31.02781 -30.18872 -26.23899 -25.21525 -21.36003 -21.12436 -20.81442 -19.21748 -16.89638 -15.85321 -15.66960 -15.16363 -14.95302 -14.57270 -14.00340 -13.39280 -12.98836 -11.81795 -11.58048 -11.07529 -10.91930 -10.82329 -10.73931 -10.49417 -10.24505 -9.84994 -9.73736 -8.90646 -8.75262 -8.46865 -8.23836 -7.40208 -6.05138 -4.09142 2.59704 3.05192 3.32978 3.36238 3.40608 3.44031 4.20215 4.42500 5.13766 5.24177 5.33798 5.70456 5.96450 6.12408 6.29215 6.45387 6.45693 6.70892 6.73844 6.79653 7.00868 7.30530 7.41028 7.68339 7.81878 7.88720 8.09949 8.37215 8.89170 9.08800 9.56445 11.04083 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.027670 B = 0.013103 C = 0.009915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.689094 B = 2136.366004 C = 2823.196067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.076 3.924 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.482 4.482 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.189 3.811 11 N -0.176 5.176 12 N -0.229 5.229 13 C -0.113 4.113 14 C 0.276 3.724 15 N -0.845 5.845 16 N -0.313 5.313 17 C -0.202 4.202 18 C -0.149 4.149 19 H 0.262 0.738 20 H 0.110 0.890 21 H 0.070 0.930 22 H 0.176 0.824 23 H 0.401 0.599 24 H 0.405 0.595 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.746 -5.640 5.745 8.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.127 4.127 3 Si 0.720 3.280 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.520 4.520 8 H 0.073 0.927 9 C 0.022 3.978 10 C 0.069 3.931 11 N -0.077 5.077 12 N -0.072 5.072 13 C -0.300 4.300 14 C 0.013 3.987 15 N -0.399 5.399 16 N -0.155 5.155 17 C -0.239 4.239 18 C -0.188 4.188 19 H 0.072 0.928 20 H 0.128 0.872 21 H 0.088 0.912 22 H 0.193 0.807 23 H 0.230 0.770 24 H 0.234 0.766 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.479 -5.180 4.698 7.420 hybrid contribution 1.423 0.861 0.901 1.891 sum 3.902 -4.319 5.599 8.076 Atomic orbital electron populations 1.69915 1.05810 1.27053 1.49218 1.24904 0.94812 0.98832 0.94156 0.86658 0.79700 0.83053 0.78634 1.21223 1.20207 1.20335 1.20202 0.92527 0.88292 1.50972 0.92734 1.19132 0.98702 0.94307 0.85683 1.21629 0.84405 0.99502 0.87558 1.50934 1.28999 1.04395 1.23416 1.73105 1.05858 1.10577 1.17682 1.23710 1.06924 0.99175 1.00166 1.20135 0.94272 0.92541 0.91731 1.41023 1.44071 1.19886 1.34889 1.78262 1.15726 1.17211 1.04284 1.22966 0.97878 0.95935 1.07112 1.22587 0.93096 1.01564 1.01510 0.92830 0.87237 0.91194 0.80740 0.77022 0.76558 0.90459 0.91044 0.91460 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.60 13.10 55.43 0.73 -23.87 15 2 C 0.08 2.10 5.42 -17.82 -0.10 2.00 15 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 15 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 7 C -0.48 -13.35 8.72 -34.44 -0.30 -13.65 15 8 H 0.05 1.59 7.82 -52.49 -0.41 1.18 15 9 C 0.02 0.58 1.49 -155.66 -0.23 0.35 15 10 C 0.19 4.36 6.52 -4.04 -0.03 4.33 15 11 N -0.18 -4.01 4.19 -10.61 -0.04 -4.05 15 12 N -0.23 -4.81 12.01 30.65 0.37 -4.44 15 13 C -0.11 -2.03 12.03 -17.31 -0.21 -2.24 15 14 C 0.28 5.16 8.57 -154.16 -1.32 3.84 15 15 N -0.85 -11.33 9.16 31.40 0.29 -11.04 15 16 N -0.31 -7.16 12.70 31.42 0.40 -6.77 15 17 C -0.20 -4.47 9.95 -26.74 -0.27 -4.74 15 18 C -0.15 -3.39 9.67 -26.73 -0.26 -3.65 15 19 H 0.26 7.03 8.32 -40.82 -0.34 6.70 15 20 H 0.11 2.71 8.14 -51.93 -0.42 2.29 15 21 H 0.07 1.43 8.09 -51.93 -0.42 1.01 15 22 H 0.18 2.37 8.06 -52.48 -0.42 1.95 15 23 H 0.40 5.05 8.96 -40.82 -0.37 4.68 15 24 H 0.41 3.90 8.96 -40.82 -0.37 3.53 15 25 H 0.08 1.73 8.14 -51.93 -0.42 1.31 15 26 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 27 H 0.07 1.39 8.14 -51.93 -0.42 0.96 15 28 H 0.08 2.04 8.14 -51.93 -0.42 1.62 15 LS Contribution 255.30 15.07 3.85 3.85 Total: -1.00 -30.91 255.30 -5.38 -36.29 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -3.23 Total: 7.11 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -2.71 Total: -13.76 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 1.74 Total: -50.18 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.91 -5.38 -36.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725249897.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.530 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds