Wall clock time and date at job start Mon Mar 30 2020 02:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00300 * 2 1 4 4 H 1.48502 * 109.47029 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47386 * 119.99789 * 3 2 1 6 6 H 1.48501 * 109.47018 * 239.99858 * 3 2 1 7 7 C 1.37878 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99915 * 185.34878 * 7 2 1 9 9 C 1.50698 * 120.00305 * 5.34583 * 7 2 1 10 10 C 1.53002 * 115.54979 * 279.48942 * 9 7 2 11 11 N 1.46500 * 109.46990 * 294.87932 * 10 9 7 12 12 N 1.28706 * 125.67186 * 274.73527 * 11 10 9 13 13 C 1.30924 * 109.70778 * 179.86565 * 12 11 10 14 14 C 1.39906 * 108.25304 * 0.39453 * 13 12 11 15 15 N 1.40056 * 126.71678 * 179.74254 * 14 13 12 16 16 N 1.31849 * 106.57268 * 359.76803 * 14 13 12 17 17 C 1.52995 * 117.50044 * 133.77945 * 9 7 2 18 18 C 1.52995 * 60.00186 * 252.50957 * 17 9 7 19 19 H 0.97000 * 119.99496 * 354.99742 * 1 2 3 20 20 H 1.08995 * 109.47214 * 54.88228 * 10 9 7 21 21 H 1.09005 * 109.47303 * 174.88232 * 10 9 7 22 22 H 1.08008 * 125.87459 * 180.16210 * 13 12 11 23 23 H 0.96998 * 120.00115 * 180.02562 * 15 14 13 24 24 H 0.97007 * 119.99879 * 0.02562 * 15 14 13 25 25 H 1.09005 * 117.50075 * 359.97438 * 17 9 7 26 26 H 1.08995 * 117.50315 * 145.02348 * 17 9 7 27 27 H 1.09001 * 117.50172 * 252.50815 * 18 17 9 28 28 H 1.09006 * 117.51966 * 107.47845 * 18 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6962 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0809 -1.1961 0.0877 9 6 1.2559 -2.4964 -0.1205 10 6 0.6216 -3.0154 1.1715 11 7 1.6753 -3.3475 2.1337 12 7 2.3096 -4.4657 2.1958 13 6 3.1844 -4.4235 3.1691 14 6 3.0932 -3.1712 3.7862 15 7 3.8491 -2.7169 4.8742 16 7 2.1560 -2.5026 3.1436 17 6 1.7954 -3.5322 -1.1088 18 6 0.5116 -2.7644 -1.4301 19 1 -0.4849 0.8369 0.0733 20 1 -0.0259 -2.2465 1.5928 21 1 0.0333 -3.9071 0.9548 22 1 3.8577 -5.2199 3.4498 23 1 3.7042 -1.8250 5.2268 24 1 4.5177 -3.2943 5.2752 25 1 2.6916 -3.2715 -1.6719 26 1 1.6987 -4.5837 -0.8388 27 1 -0.4297 -3.3108 -1.3713 28 1 0.5631 -1.9985 -2.2041 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725249897.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:08 Heat of formation + Delta-G solvation = 111.752873 kcal Electronic energy + Delta-G solvation = -13575.376853 eV Core-core repulsion = 11242.992509 eV Total energy + Delta-G solvation = -2332.384344 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.82894 -38.58116 -35.78938 -34.03888 -32.60854 -31.67555 -28.00497 -27.12948 -23.03107 -22.81541 -22.29405 -21.08905 -18.57210 -17.59990 -16.92748 -16.78093 -16.52255 -16.45841 -15.72240 -14.98749 -14.77250 -13.71668 -13.40326 -12.99115 -12.85673 -12.51099 -12.29565 -12.25912 -12.05722 -11.58752 -11.38954 -10.86700 -10.56562 -10.22738 -10.11196 -8.79995 -8.13366 -6.21747 1.04726 1.37377 1.38193 1.45195 1.52674 2.01967 2.40866 2.91615 3.15585 3.48105 3.68076 4.20961 4.35046 4.48542 4.50165 4.64098 4.85465 4.97084 5.16251 5.25727 5.35146 5.49724 5.59749 5.72708 6.15131 6.36162 6.51998 6.76773 7.03329 7.44863 7.62165 8.94610 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.027670 B = 0.013103 C = 0.009915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.689094 B = 2136.366004 C = 2823.196067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.037 3.963 3 Si 0.941 3.059 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.493 4.493 8 H 0.029 0.971 9 C -0.003 4.003 10 C 0.201 3.799 11 N -0.203 5.203 12 N -0.247 5.247 13 C -0.097 4.097 14 C 0.279 3.721 15 N -0.822 5.822 16 N -0.368 5.368 17 C -0.183 4.183 18 C -0.143 4.143 19 H 0.262 0.738 20 H 0.081 0.919 21 H 0.092 0.908 22 H 0.222 0.778 23 H 0.407 0.593 24 H 0.426 0.574 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.767 -6.577 6.524 10.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.531 4.531 8 H 0.048 0.952 9 C -0.005 4.005 10 C 0.081 3.919 11 N -0.103 5.103 12 N -0.088 5.088 13 C -0.286 4.286 14 C 0.015 3.985 15 N -0.378 5.378 16 N -0.210 5.210 17 C -0.220 4.220 18 C -0.182 4.182 19 H 0.072 0.928 20 H 0.100 0.900 21 H 0.110 0.890 22 H 0.238 0.762 23 H 0.237 0.763 24 H 0.259 0.741 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.515 -6.122 5.483 8.939 hybrid contribution 1.236 1.089 0.778 1.821 sum 4.750 -5.033 6.261 9.333 Atomic orbital electron populations 1.69983 1.06502 1.27515 1.49844 1.25460 0.95583 1.01233 0.94151 0.85885 0.78757 0.80322 0.78264 1.20293 1.20790 1.19949 1.20269 0.91518 0.90257 1.51074 0.95243 1.19199 1.00040 0.94161 0.87111 1.21277 0.84456 0.99486 0.86727 1.50729 1.30277 1.05037 1.24301 1.73051 1.06617 1.10209 1.18889 1.24488 1.05907 0.99790 0.98398 1.20510 0.93345 0.92588 0.92054 1.41069 1.43227 1.20504 1.33040 1.78157 1.18038 1.19025 1.05773 1.22915 0.97236 0.96442 1.05390 1.22541 0.94401 1.01329 0.99917 0.92845 0.90025 0.89044 0.76174 0.76348 0.74111 0.91127 0.89022 0.89230 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.77 13.10 21.45 0.28 -50.49 15 2 C 0.04 2.04 5.42 84.65 0.46 2.50 15 3 Si 0.94 44.91 29.54 68.60 2.03 46.94 15 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 5 H -0.28 -13.59 7.11 99.48 0.71 -12.89 15 6 H -0.27 -12.80 7.11 99.48 0.71 -12.09 15 7 C -0.49 -27.74 8.72 25.60 0.22 -27.52 15 8 H 0.03 1.75 7.82 -2.91 -0.02 1.73 15 9 C 0.00 -0.17 1.49 -52.93 -0.08 -0.25 15 10 C 0.20 9.31 6.52 86.38 0.56 9.88 15 11 N -0.20 -9.19 4.19 -187.49 -0.79 -9.98 15 12 N -0.25 -9.94 12.01 -56.95 -0.68 -10.62 15 13 C -0.10 -3.21 12.03 85.23 1.03 -2.19 15 14 C 0.28 9.89 8.57 133.05 1.14 11.03 15 15 N -0.82 -19.73 9.16 -54.56 -0.50 -20.22 15 16 N -0.37 -16.71 12.70 -54.51 -0.69 -17.40 15 17 C -0.18 -7.93 9.95 30.59 0.30 -7.62 15 18 C -0.14 -6.45 9.67 30.59 0.30 -6.15 15 19 H 0.26 14.20 8.32 -92.71 -0.77 13.43 15 20 H 0.08 4.16 8.14 -2.39 -0.02 4.14 15 21 H 0.09 3.69 8.09 -2.38 -0.02 3.67 15 22 H 0.22 4.93 8.06 -2.91 -0.02 4.90 15 23 H 0.41 9.29 8.96 -92.71 -0.83 8.46 15 24 H 0.43 6.59 8.96 -92.70 -0.83 5.76 15 25 H 0.07 3.12 8.14 -2.38 -0.02 3.10 15 26 H 0.09 3.59 8.14 -2.39 -0.02 3.57 15 27 H 0.09 3.58 8.14 -2.39 -0.02 3.56 15 28 H 0.07 3.21 8.14 -2.38 -0.02 3.19 15 Total: -1.00 -66.72 255.30 3.10 -63.62 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.47 Total: 18.48 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 3.93 Total: -20.32 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -2.38 Total: -108.71 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -66.72 3.10 -63.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725249897.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.370 kcal (2) G-P(sol) polarization free energy of solvation -66.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds