Wall clock time and date at job start Mon Mar 30 2020 02:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46881 * 2 1 4 4 C 1.50699 * 109.47331 * 240.00136 * 2 1 3 5 5 N 1.30458 * 126.07092 * 300.02495 * 4 2 1 6 6 O 1.21274 * 110.68279 * 179.97438 * 5 4 2 7 7 C 1.34746 * 109.53655 * 0.02562 * 6 5 4 8 8 C 1.40346 * 126.79612 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99669 * 174.30849 * 8 7 6 10 10 C 1.40464 * 119.99800 * 354.30628 * 8 7 6 11 11 N 1.30509 * 119.99717 * 5.98654 * 10 8 7 12 12 Si 1.86793 * 120.00018 * 185.99324 * 10 8 7 13 13 H 1.48499 * 109.47235 * 94.97697 * 12 10 8 14 14 H 1.48503 * 109.47253 * 214.98010 * 12 10 8 15 15 H 1.48509 * 109.47103 * 334.97918 * 12 10 8 16 16 N 1.33327 * 106.41084 * 359.73730 * 7 6 5 17 17 C 1.53000 * 109.47228 * 120.00111 * 2 1 3 18 18 C 1.53000 * 117.49404 * 299.99988 * 17 2 1 19 19 C 1.52997 * 60.03540 * 252.49916 * 18 17 2 20 20 H 1.09007 * 109.47162 * 60.00292 * 1 2 3 21 21 H 1.08994 * 109.47307 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47449 * 299.99967 * 1 2 3 23 23 H 0.97007 * 119.99676 * 179.97438 * 11 10 8 24 24 H 1.08992 * 115.55109 * 85.66597 * 17 2 1 25 25 H 1.08999 * 117.50746 * 359.97438 * 18 17 2 26 26 H 1.09005 * 117.49768 * 145.00093 * 18 17 2 27 27 H 1.08999 * 117.49979 * 107.50020 * 19 18 17 28 28 H 1.09001 * 117.50271 * 252.52980 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7909 -1.9511 -1.5535 6 8 2.3321 -2.2339 -2.6013 7 6 2.9988 -1.1601 -3.0684 8 6 3.7500 -1.0863 -4.2516 9 1 4.1657 -0.1415 -4.5692 10 6 3.9611 -2.2413 -5.0226 11 7 3.3637 -3.3570 -4.7036 12 14 5.0970 -2.1805 -6.5042 13 1 6.4557 -2.6275 -6.1050 14 1 4.5733 -3.0763 -7.5666 15 1 5.1650 -0.7891 -7.0190 16 7 2.7993 -0.1801 -2.1867 17 6 2.0400 -0.7213 1.2492 18 6 1.6357 -0.1495 2.6095 19 6 3.0743 0.0054 2.1126 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 3.5092 -4.1545 -5.2363 24 1 2.1266 -1.8044 1.1642 25 1 1.0067 0.7407 2.6146 26 1 1.4564 -0.8565 3.4195 27 1 3.3915 0.9973 1.7905 28 1 3.8415 -0.6001 2.5952 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885354508.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:48 Heat of formation + Delta-G solvation = 57.852270 kcal Electronic energy + Delta-G solvation = -13312.104111 eV Core-core repulsion = 10945.089711 eV Total energy + Delta-G solvation = -2367.014400 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.96339 -37.69773 -34.07408 -33.81626 -31.65167 -29.56404 -26.42131 -24.48911 -22.04124 -21.55741 -21.34720 -19.44121 -17.48426 -15.74693 -15.60981 -15.36799 -14.69574 -14.17581 -13.37914 -13.13932 -12.67819 -12.00499 -11.73053 -11.63770 -11.42238 -11.37424 -10.96526 -10.64935 -10.45352 -10.13670 -9.96102 -9.85308 -9.65154 -9.37824 -8.84287 -8.18829 -7.05728 -4.97941 2.81008 2.97590 3.03947 3.32805 3.75706 3.91599 4.12748 4.84067 5.03994 5.10093 5.22555 5.36922 5.50648 5.74344 5.80631 5.82265 5.89062 6.08635 6.13115 6.28583 6.33129 6.54586 6.58065 6.85578 6.89594 7.50069 7.94616 8.16231 8.36972 8.51390 9.93864 10.45537 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.066249 B = 0.007485 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.549438 B = 3739.725646 C = 3829.086900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.041 3.959 3 H 0.083 0.917 4 C 0.169 3.831 5 N -0.469 5.469 6 O 0.043 5.957 7 C 0.302 3.698 8 C -0.419 4.419 9 H 0.112 0.888 10 C 0.071 3.929 11 N -0.765 5.765 12 Si 0.936 3.064 13 H -0.265 1.265 14 H -0.272 1.272 15 H -0.256 1.256 16 N -0.615 5.615 17 C -0.135 4.135 18 C -0.180 4.180 19 C -0.180 4.180 20 H 0.053 0.947 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.291 0.709 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 2.866 5.228 6.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.021 3.979 3 H 0.102 0.898 4 C -0.105 4.105 5 N -0.198 5.198 6 O -0.003 6.003 7 C 0.110 3.890 8 C -0.456 4.456 9 H 0.130 0.870 10 C -0.154 4.154 11 N -0.392 5.392 12 Si 0.758 3.242 13 H -0.190 1.190 14 H -0.197 1.197 15 H -0.180 1.180 16 N -0.358 5.358 17 C -0.154 4.154 18 C -0.217 4.217 19 C -0.217 4.217 20 H 0.072 0.928 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.102 0.898 24 H 0.124 0.876 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.215 2.527 5.761 6.407 hybrid contribution 0.629 -0.186 -0.844 1.069 sum -0.586 2.342 4.917 5.477 Atomic orbital electron populations 1.21720 0.94088 1.02432 1.01048 1.18738 0.94974 0.97283 0.86912 0.89840 1.24719 0.98099 0.89977 0.97720 1.74252 1.24384 1.17435 1.03754 1.85526 1.50786 1.37009 1.26984 1.24226 0.90548 0.79655 0.94523 1.18559 1.28274 0.97263 1.01549 0.87033 1.26187 0.95468 0.94267 0.99429 1.69652 1.32315 1.01175 1.36072 0.85836 0.79596 0.79878 0.78853 1.18979 1.19727 1.17976 1.72229 1.27488 1.29843 1.06288 1.22291 1.02989 0.99667 0.90413 1.22926 0.98191 1.03153 0.97475 1.23002 0.92251 1.02165 1.04262 0.92760 0.92063 0.92482 0.89772 0.87577 0.88891 0.89129 0.88757 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.02 37.16 0.33 -1.97 15 2 C 0.04 0.81 3.01 -91.77 -0.28 0.53 15 3 H 0.08 1.59 7.90 -51.93 -0.41 1.18 15 4 C 0.17 4.32 6.67 -156.78 -1.05 3.28 15 5 N -0.47 -12.94 12.14 31.51 0.38 -12.56 15 6 O 0.04 1.29 9.76 15.15 0.15 1.44 15 7 C 0.30 8.77 7.81 -16.35 -0.13 8.64 15 8 C -0.42 -11.27 9.47 -37.95 -0.36 -11.63 15 9 H 0.11 2.83 7.86 -52.49 -0.41 2.42 15 10 C 0.07 1.75 5.50 -17.28 -0.09 1.65 15 11 N -0.76 -19.75 12.09 55.57 0.67 -19.08 15 12 Si 0.94 17.82 29.57 -169.99 -5.03 12.79 15 13 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 14 H -0.27 -5.01 7.11 56.52 0.40 -4.61 15 15 H -0.26 -4.77 7.11 56.52 0.40 -4.37 15 16 N -0.61 -17.28 11.61 -11.51 -0.13 -17.41 15 17 C -0.13 -2.35 5.14 -90.58 -0.47 -2.81 15 18 C -0.18 -2.41 9.73 -26.73 -0.26 -2.67 15 19 C -0.18 -2.67 10.18 -26.69 -0.27 -2.95 15 20 H 0.05 0.95 8.14 -51.93 -0.42 0.52 15 21 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.06 0.78 7.29 -51.93 -0.38 0.40 15 23 H 0.29 6.64 8.29 -40.82 -0.34 6.30 15 24 H 0.11 2.05 8.10 -51.93 -0.42 1.63 15 25 H 0.09 1.12 7.61 -51.93 -0.40 0.73 15 26 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 27 H 0.09 1.37 8.05 -51.93 -0.42 0.95 15 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 LS Contribution 250.68 15.07 3.78 3.78 Total: -1.00 -30.20 250.68 -6.01 -36.20 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -3.26 Total: 2.76 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -2.57 Total: -7.92 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.92 Total: -49.05 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.15 Total: 1.44 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.20 -6.01 -36.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885354508.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.057 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds