Wall clock time and date at job start Mon Mar 30 2020 02:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46881 * 2 1 4 4 C 1.50699 * 109.47331 * 240.00136 * 2 1 3 5 5 N 1.30458 * 126.07092 * 300.02495 * 4 2 1 6 6 O 1.21274 * 110.68279 * 179.97438 * 5 4 2 7 7 C 1.34746 * 109.53655 * 0.02562 * 6 5 4 8 8 C 1.40346 * 126.79612 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99669 * 174.30849 * 8 7 6 10 10 C 1.40464 * 119.99800 * 354.30628 * 8 7 6 11 11 N 1.30509 * 119.99717 * 5.98654 * 10 8 7 12 12 Si 1.86793 * 120.00018 * 185.99324 * 10 8 7 13 13 H 1.48499 * 109.47235 * 94.97697 * 12 10 8 14 14 H 1.48503 * 109.47253 * 214.98010 * 12 10 8 15 15 H 1.48509 * 109.47103 * 334.97918 * 12 10 8 16 16 N 1.33327 * 106.41084 * 359.73730 * 7 6 5 17 17 C 1.53000 * 109.47228 * 120.00111 * 2 1 3 18 18 C 1.53000 * 117.49404 * 299.99988 * 17 2 1 19 19 C 1.52997 * 60.03540 * 252.49916 * 18 17 2 20 20 H 1.09007 * 109.47162 * 60.00292 * 1 2 3 21 21 H 1.08994 * 109.47307 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47449 * 299.99967 * 1 2 3 23 23 H 0.97007 * 119.99676 * 179.97438 * 11 10 8 24 24 H 1.08992 * 115.55109 * 85.66597 * 17 2 1 25 25 H 1.08999 * 117.50746 * 359.97438 * 18 17 2 26 26 H 1.09005 * 117.49768 * 145.00093 * 18 17 2 27 27 H 1.08999 * 117.49979 * 107.50020 * 19 18 17 28 28 H 1.09001 * 117.50271 * 252.52980 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7909 -1.9511 -1.5535 6 8 2.3321 -2.2339 -2.6013 7 6 2.9988 -1.1601 -3.0684 8 6 3.7500 -1.0863 -4.2516 9 1 4.1657 -0.1415 -4.5692 10 6 3.9611 -2.2413 -5.0226 11 7 3.3637 -3.3570 -4.7036 12 14 5.0970 -2.1805 -6.5042 13 1 6.4557 -2.6275 -6.1050 14 1 4.5733 -3.0763 -7.5666 15 1 5.1650 -0.7891 -7.0190 16 7 2.7993 -0.1801 -2.1867 17 6 2.0400 -0.7213 1.2492 18 6 1.6357 -0.1495 2.6095 19 6 3.0743 0.0054 2.1126 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 3.5092 -4.1545 -5.2363 24 1 2.1266 -1.8044 1.1642 25 1 1.0067 0.7407 2.6146 26 1 1.4564 -0.8565 3.4195 27 1 3.3915 0.9973 1.7905 28 1 3.8415 -0.6001 2.5952 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885354508.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:47 Heat of formation + Delta-G solvation = 37.214631 kcal Electronic energy + Delta-G solvation = -13312.999027 eV Core-core repulsion = 10945.089711 eV Total energy + Delta-G solvation = -2367.909316 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.02620 -39.03160 -36.06819 -35.69140 -33.39813 -31.43683 -28.48892 -25.99323 -23.64296 -23.20339 -23.02326 -21.08515 -19.32979 -17.82894 -17.45711 -17.08808 -16.31711 -15.58199 -15.05581 -14.70946 -14.12831 -13.65506 -13.53659 -13.29907 -13.06934 -12.66342 -12.29299 -12.24191 -11.96170 -11.93209 -11.76660 -11.45846 -11.17536 -10.97629 -10.84995 -10.24088 -8.96278 -7.09353 0.99916 1.39966 1.55743 1.60743 2.03904 2.14948 2.86470 3.00781 3.22729 3.46290 3.71470 3.97854 4.12266 4.23290 4.33143 4.48668 4.63176 4.73811 4.83072 4.93407 4.96945 5.09293 5.19340 5.27008 5.34966 5.59803 5.88027 6.09321 6.30770 6.45412 8.06524 8.33911 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.066249 B = 0.007485 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.549438 B = 3739.725646 C = 3829.086900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.040 3.960 3 H 0.090 0.910 4 C 0.178 3.822 5 N -0.493 5.493 6 O 0.008 5.992 7 C 0.269 3.731 8 C -0.437 4.437 9 H 0.121 0.879 10 C 0.029 3.971 11 N -0.797 5.797 12 Si 1.023 2.977 13 H -0.255 1.255 14 H -0.257 1.257 15 H -0.247 1.247 16 N -0.644 5.644 17 C -0.168 4.168 18 C -0.141 4.141 19 C -0.181 4.181 20 H 0.043 0.957 21 H 0.046 0.954 22 H 0.100 0.900 23 H 0.306 0.694 24 H 0.077 0.923 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.269 3.662 5.393 6.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.020 3.980 3 H 0.108 0.892 4 C -0.097 4.097 5 N -0.228 5.228 6 O -0.033 6.033 7 C 0.080 3.920 8 C -0.474 4.474 9 H 0.138 0.862 10 C -0.193 4.193 11 N -0.424 5.424 12 Si 0.839 3.161 13 H -0.180 1.180 14 H -0.181 1.181 15 H -0.170 1.170 16 N -0.389 5.389 17 C -0.188 4.188 18 C -0.178 4.178 19 C -0.218 4.218 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.119 0.881 23 H 0.117 0.883 24 H 0.096 0.904 25 H 0.134 0.866 26 H 0.129 0.871 27 H 0.116 0.884 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.733 3.304 5.917 6.817 hybrid contribution 0.475 -0.447 -0.881 1.096 sum -0.258 2.856 5.037 5.796 Atomic orbital electron populations 1.21691 0.92112 1.01994 1.02676 1.19018 0.96585 0.96981 0.85438 0.89206 1.25750 0.96024 0.89480 0.98437 1.74189 1.25979 1.18735 1.03947 1.85465 1.52038 1.37732 1.28077 1.24860 0.91408 0.80030 0.95718 1.19128 1.28001 0.98851 1.01454 0.86157 1.27411 0.96666 0.92797 1.02445 1.69709 1.32900 1.02295 1.37486 0.84592 0.76866 0.80566 0.74059 1.17967 1.18126 1.17014 1.72225 1.29146 1.30232 1.07258 1.22076 1.06963 0.98139 0.91603 1.23069 0.96830 1.03395 0.94484 1.23121 0.93397 1.01921 1.03327 0.93752 0.93504 0.88142 0.88300 0.90415 0.86633 0.87115 0.88385 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.02 71.98 0.65 -3.56 15 2 C 0.04 1.56 3.01 -11.54 -0.03 1.53 15 3 H 0.09 3.36 7.90 -2.39 -0.02 3.34 15 4 C 0.18 9.38 6.67 138.61 0.92 10.31 15 5 N -0.49 -28.50 12.14 -56.64 -0.69 -29.19 15 6 O 0.01 0.48 9.76 64.29 0.63 1.11 15 7 C 0.27 16.24 7.81 85.06 0.66 16.90 15 8 C -0.44 -23.98 9.47 23.33 0.22 -23.76 15 9 H 0.12 6.17 7.86 -2.91 -0.02 6.15 15 10 C 0.03 1.40 5.50 85.43 0.47 1.87 15 11 N -0.80 -41.60 12.09 21.91 0.26 -41.34 15 12 Si 1.02 35.29 29.57 68.60 2.03 37.32 15 13 H -0.26 -8.43 7.11 99.48 0.71 -7.72 15 14 H -0.26 -8.23 7.11 99.48 0.71 -7.52 15 15 H -0.25 -8.13 7.11 99.48 0.71 -7.42 15 16 N -0.64 -37.42 11.61 -305.24 -3.54 -40.96 15 17 C -0.17 -5.76 5.14 -10.77 -0.06 -5.82 15 18 C -0.14 -3.30 9.73 30.59 0.30 -3.00 15 19 C -0.18 -5.04 10.18 30.62 0.31 -4.72 15 20 H 0.04 1.52 8.14 -2.38 -0.02 1.50 15 21 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 22 H 0.10 2.43 7.29 -2.39 -0.02 2.41 15 23 H 0.31 13.87 8.29 -92.70 -0.77 13.10 15 24 H 0.08 3.09 8.10 -2.39 -0.02 3.07 15 25 H 0.12 2.22 7.61 -2.39 -0.02 2.20 15 26 H 0.11 2.19 8.14 -2.38 -0.02 2.17 15 27 H 0.10 2.65 8.05 -2.39 -0.02 2.63 15 28 H 0.10 2.53 8.14 -2.39 -0.02 2.51 15 Total: -1.00 -68.54 250.68 3.30 -65.25 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 1.16 Total: 18.07 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 3.45 Total: -10.25 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -3.97 Total: -111.48 kcal Atomic # 8 Polarization: 0.48 SS G_CDS: 0.63 Total: 1.11 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Total: -68.54 3.30 -65.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885354508.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.461 kcal (2) G-P(sol) polarization free energy of solvation -68.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds