Wall clock time and date at job start Mon Mar 30 2020 02:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99905 * 2 1 4 4 H 1.48498 * 109.47096 * 270.00275 * 3 2 1 5 5 H 1.48495 * 109.47271 * 30.00037 * 3 2 1 6 6 H 1.48499 * 109.46794 * 150.00313 * 3 2 1 7 7 C 1.37878 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99864 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99840 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46791 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46976 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47310 * 176.55694 * 11 10 9 13 13 C 1.36336 * 125.63640 * 265.62625 * 12 11 10 14 14 C 1.34851 * 108.21605 * 180.14171 * 13 12 11 15 15 C 1.40885 * 107.41788 * 359.63829 * 14 13 12 16 16 C 1.34853 * 107.41761 * 0.22342 * 15 14 13 17 17 C 1.50702 * 125.88874 * 180.02562 * 16 15 14 18 18 N 1.46896 * 109.47203 * 265.32382 * 17 16 15 19 19 H 0.97000 * 120.00266 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46869 * 59.99897 * 9 7 2 21 21 H 1.08994 * 109.47344 * 299.99798 * 9 7 2 22 22 H 1.09004 * 109.47258 * 60.00429 * 10 9 7 23 23 H 1.08994 * 109.47252 * 300.00148 * 10 9 7 24 24 H 1.09003 * 109.47027 * 56.55767 * 11 10 9 25 25 H 1.09003 * 109.46985 * 296.55928 * 11 10 9 26 26 H 1.08006 * 125.89524 * 0.03128 * 13 12 11 27 27 H 1.08000 * 126.28734 * 179.89509 * 14 13 12 28 28 H 1.08005 * 126.29258 * 180.24883 * 15 14 13 29 29 H 1.09001 * 109.47283 * 25.32463 * 17 16 15 30 30 H 1.08995 * 109.46884 * 145.32497 * 17 16 15 31 31 H 1.00906 * 111.00084 * 65.46486 * 18 17 16 32 32 H 1.00894 * 111.00267 * 189.42377 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6366 -0.0022 12 7 6.0400 -4.0152 0.0808 13 6 6.3854 -4.6679 1.2269 14 6 6.7880 -5.9123 0.8984 15 6 6.6795 -6.0350 -0.5009 16 6 6.2194 -4.8593 -0.9747 17 6 5.9496 -4.5346 -2.4214 18 7 7.1260 -3.8744 -3.0028 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6803 0.8889 21 1 3.8745 -0.6800 -0.8911 22 1 3.6579 -3.1506 -0.8908 23 1 3.6585 -3.1502 0.8892 24 1 5.9156 -2.0699 0.8548 25 1 5.9141 -2.1774 -0.9219 26 1 6.3453 -4.2584 2.2255 27 1 7.1270 -6.6759 1.5827 28 1 6.9201 -6.9100 -1.0865 29 1 5.7423 -5.4548 -2.9678 30 1 5.0888 -3.8696 -2.4901 31 1 7.9154 -4.5023 -3.0323 32 1 6.9195 -3.5099 -3.9206 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085581855.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:36 Heat of formation + Delta-G solvation = 32.730875 kcal Electronic energy + Delta-G solvation = -13280.639309 eV Core-core repulsion = 11048.368658 eV Total energy + Delta-G solvation = -2232.270651 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.94560 -34.93233 -34.57123 -32.60963 -30.56827 -28.81733 -26.80159 -24.19549 -23.11489 -20.35612 -20.29293 -18.77542 -17.04204 -16.46535 -15.68321 -14.94433 -14.43672 -14.24470 -13.84109 -13.28467 -13.04848 -12.79017 -12.61529 -12.08235 -11.91831 -11.61442 -11.29969 -11.07842 -10.83840 -10.10236 -9.91423 -9.80457 -9.28148 -8.82370 -8.59293 -8.22891 -7.77498 -6.09173 -4.08260 2.53924 3.26308 3.26780 3.33669 3.35044 3.37146 4.40193 4.68976 5.00010 5.15056 5.24654 5.30335 5.47087 5.60508 5.66352 5.79838 5.83075 5.89624 6.29607 6.45186 6.50866 6.58248 6.73126 6.98511 7.17667 7.28324 7.31065 7.36782 7.60645 7.69132 7.76231 8.47964 8.95202 9.52341 11.04196 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.041795 B = 0.006938 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.774195 B = 4034.818081 C = 4254.875324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.114 4.114 11 C 0.097 3.903 12 N -0.423 5.423 13 C -0.012 4.012 14 C -0.211 4.211 15 C -0.206 4.206 16 C 0.024 3.976 17 C 0.126 3.874 18 N -0.847 5.847 19 H 0.264 0.736 20 H 0.017 0.983 21 H 0.014 0.986 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.157 0.843 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.341 0.659 32 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.002 -7.840 -2.784 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.152 4.152 11 C -0.024 4.024 12 N -0.097 5.097 13 C -0.144 4.144 14 C -0.235 4.235 15 C -0.231 4.231 16 C -0.090 4.090 17 C -0.005 4.005 18 N -0.377 5.377 19 H 0.073 0.927 20 H 0.036 0.964 21 H 0.032 0.968 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.108 0.892 26 H 0.174 0.826 27 H 0.147 0.853 28 H 0.144 0.856 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.153 0.847 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.649 -6.840 -2.196 15.424 hybrid contribution 0.213 0.150 -0.627 0.679 sum 13.861 -6.689 -2.824 15.648 Atomic orbital electron populations 1.69912 1.06319 1.26969 1.50873 1.25033 0.94750 0.99193 0.94469 0.86768 0.80330 0.83567 0.78556 1.20227 1.21298 1.19019 1.21086 0.89261 0.94550 1.51151 0.91041 1.19519 0.97475 0.91361 0.96464 1.21850 0.90610 1.00692 1.02079 1.22213 0.97105 0.79223 1.03899 1.44230 1.48061 1.11617 1.05748 1.21801 1.07483 0.94232 0.90835 1.20725 1.10417 0.96941 0.95435 1.20561 1.10245 0.97364 0.94974 1.20088 1.08379 0.91064 0.89437 1.20171 0.93557 0.97893 0.88853 1.58607 1.07423 1.42652 1.29059 0.92655 0.96429 0.96798 0.92303 0.92126 0.89878 0.89189 0.82551 0.85307 0.85613 0.93454 0.89893 0.84652 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.11 -2.25 5.48 -26.73 -0.15 -2.40 16 11 C 0.10 1.59 5.71 -4.04 -0.02 1.57 16 12 N -0.42 -6.81 2.75 -112.53 -0.31 -7.11 16 13 C -0.01 -0.18 11.43 -16.75 -0.19 -0.37 16 14 C -0.21 -3.06 10.86 -39.78 -0.43 -3.49 16 15 C -0.21 -3.01 10.76 -39.78 -0.43 -3.43 16 16 C 0.02 0.36 6.47 -81.79 -0.53 -0.17 16 17 C 0.13 1.63 6.76 -4.98 -0.03 1.59 16 18 N -0.85 -9.51 9.57 -11.41 -0.11 -9.62 16 19 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 20 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 21 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 22 H 0.06 1.18 7.63 -51.93 -0.40 0.79 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 25 H 0.09 1.46 7.91 -51.93 -0.41 1.05 16 26 H 0.16 2.02 8.06 -52.48 -0.42 1.60 16 27 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.17 7.45 -51.93 -0.39 0.79 16 31 H 0.34 3.37 9.07 -39.29 -0.36 3.01 16 32 H 0.34 3.15 9.08 -39.30 -0.36 2.79 16 LS Contribution 271.93 15.07 4.10 4.10 Total: -1.00 -31.37 271.93 -7.34 -38.71 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.80 Total: 4.51 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -2.33 Total: -20.40 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.36 Total: -43.76 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.37 -7.34 -38.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085581855.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.441 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds