Wall clock time and date at job start Mon Mar 30 2020 02:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99905 * 2 1 4 4 H 1.48498 * 109.47096 * 270.00275 * 3 2 1 5 5 H 1.48495 * 109.47271 * 30.00037 * 3 2 1 6 6 H 1.48499 * 109.46794 * 150.00313 * 3 2 1 7 7 C 1.37878 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99864 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99840 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46791 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46976 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47310 * 176.55694 * 11 10 9 13 13 C 1.36336 * 125.63640 * 265.62625 * 12 11 10 14 14 C 1.34851 * 108.21605 * 180.14171 * 13 12 11 15 15 C 1.40885 * 107.41788 * 359.63829 * 14 13 12 16 16 C 1.34853 * 107.41761 * 0.22342 * 15 14 13 17 17 C 1.50702 * 125.88874 * 180.02562 * 16 15 14 18 18 N 1.46896 * 109.47203 * 265.32382 * 17 16 15 19 19 H 0.97000 * 120.00266 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46869 * 59.99897 * 9 7 2 21 21 H 1.08994 * 109.47344 * 299.99798 * 9 7 2 22 22 H 1.09004 * 109.47258 * 60.00429 * 10 9 7 23 23 H 1.08994 * 109.47252 * 300.00148 * 10 9 7 24 24 H 1.09003 * 109.47027 * 56.55767 * 11 10 9 25 25 H 1.09003 * 109.46985 * 296.55928 * 11 10 9 26 26 H 1.08006 * 125.89524 * 0.03128 * 13 12 11 27 27 H 1.08000 * 126.28734 * 179.89509 * 14 13 12 28 28 H 1.08005 * 126.29258 * 180.24883 * 15 14 13 29 29 H 1.09001 * 109.47283 * 25.32463 * 17 16 15 30 30 H 1.08995 * 109.46884 * 145.32497 * 17 16 15 31 31 H 1.00906 * 111.00084 * 65.46486 * 18 17 16 32 32 H 1.00894 * 111.00267 * 189.42377 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6366 -0.0022 12 7 6.0400 -4.0152 0.0808 13 6 6.3854 -4.6679 1.2269 14 6 6.7880 -5.9123 0.8984 15 6 6.6795 -6.0350 -0.5009 16 6 6.2194 -4.8593 -0.9747 17 6 5.9496 -4.5346 -2.4214 18 7 7.1260 -3.8744 -3.0028 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6803 0.8889 21 1 3.8745 -0.6800 -0.8911 22 1 3.6579 -3.1506 -0.8908 23 1 3.6585 -3.1502 0.8892 24 1 5.9156 -2.0699 0.8548 25 1 5.9141 -2.1774 -0.9219 26 1 6.3453 -4.2584 2.2255 27 1 7.1270 -6.6759 1.5827 28 1 6.9201 -6.9100 -1.0865 29 1 5.7423 -5.4548 -2.9678 30 1 5.0888 -3.8696 -2.4901 31 1 7.9154 -4.5023 -3.0323 32 1 6.9195 -3.5099 -3.9206 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085581855.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:36 Heat of formation + Delta-G solvation = 11.851800 kcal Electronic energy + Delta-G solvation = -13281.544694 eV Core-core repulsion = 11048.368658 eV Total energy + Delta-G solvation = -2233.176036 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.08156 -36.58719 -35.51840 -34.55299 -32.20368 -29.86213 -28.50749 -25.22918 -24.79130 -22.13748 -21.43310 -19.97437 -18.92936 -17.82868 -16.71454 -16.28868 -16.09891 -15.79904 -15.09485 -14.68965 -14.33989 -14.25468 -13.91777 -13.66218 -13.31459 -13.02968 -12.77643 -12.52764 -12.26615 -11.86441 -11.79819 -11.58520 -11.40808 -10.79093 -9.69904 -9.42356 -8.89369 -8.31689 -6.37418 1.36353 1.38269 1.39636 1.50170 2.14916 2.17759 2.34931 3.03678 3.78412 3.87371 3.93878 4.14358 4.27261 4.40743 4.44454 4.55448 4.64383 4.75071 4.84563 4.92466 4.95203 5.39365 5.40715 5.45416 5.50043 5.61231 6.10121 6.23493 6.26440 6.44161 6.55834 6.65272 6.70931 7.27413 8.85350 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.041795 B = 0.006938 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.774195 B = 4034.818081 C = 4254.875324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.537 4.537 8 H 0.026 0.974 9 C -0.006 4.006 10 C -0.101 4.101 11 C 0.110 3.890 12 N -0.436 5.436 13 C -0.030 4.030 14 C -0.216 4.216 15 C -0.214 4.214 16 C 0.007 3.993 17 C 0.129 3.871 18 N -0.851 5.851 19 H 0.267 0.733 20 H 0.028 0.972 21 H 0.026 0.974 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.174 0.826 27 H 0.149 0.851 28 H 0.144 0.856 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.350 0.650 32 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.352 -7.248 -2.901 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.164 1.164 7 C -0.575 4.575 8 H 0.044 0.956 9 C -0.044 4.044 10 C -0.140 4.140 11 C -0.011 4.011 12 N -0.110 5.110 13 C -0.160 4.160 14 C -0.241 4.241 15 C -0.240 4.240 16 C -0.106 4.106 17 C -0.002 4.002 18 N -0.383 5.383 19 H 0.076 0.924 20 H 0.046 0.954 21 H 0.045 0.955 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.117 0.883 25 H 0.113 0.887 26 H 0.191 0.809 27 H 0.166 0.834 28 H 0.162 0.838 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 16.024 -6.278 -2.321 17.366 hybrid contribution -0.578 -0.168 -0.596 0.847 sum 15.447 -6.446 -2.917 16.990 Atomic orbital electron populations 1.70077 1.08497 1.28314 1.52416 1.26081 0.95654 1.03773 0.93873 0.85597 0.79602 0.77719 0.79377 1.18970 1.21058 1.16430 1.21451 0.92183 0.92988 1.50911 0.95608 1.19439 0.93867 0.93846 0.97238 1.21621 0.93387 0.98169 1.00795 1.21952 0.94167 0.80110 1.04891 1.44263 1.48801 1.11531 1.06399 1.22249 1.07660 0.94692 0.91424 1.21081 1.09883 0.97225 0.95898 1.20902 1.09883 0.97791 0.95375 1.20559 1.08418 0.91314 0.90265 1.20121 0.93561 0.98353 0.88173 1.58539 1.07101 1.42788 1.29901 0.92415 0.95393 0.95537 0.93537 0.93589 0.88329 0.88654 0.80893 0.83360 0.83783 0.91884 0.91584 0.83688 0.83146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 2 C 0.00 0.17 5.47 84.66 0.46 0.63 16 3 Si 0.95 43.50 27.47 68.60 1.88 45.39 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 7 C -0.54 -31.17 9.66 25.60 0.25 -30.92 16 8 H 0.03 1.67 7.99 -2.91 -0.02 1.64 16 9 C -0.01 -0.27 4.04 29.85 0.12 -0.15 16 10 C -0.10 -3.95 5.48 30.60 0.17 -3.79 16 11 C 0.11 3.42 5.71 86.38 0.49 3.92 16 12 N -0.44 -13.33 2.75 -509.95 -1.40 -14.73 16 13 C -0.03 -0.84 11.43 83.21 0.95 0.11 16 14 C -0.22 -5.86 10.86 22.14 0.24 -5.61 16 15 C -0.21 -5.84 10.76 22.14 0.24 -5.60 16 16 C 0.01 0.21 6.47 41.08 0.27 0.48 16 17 C 0.13 3.15 6.76 85.56 0.58 3.73 16 18 N -0.85 -17.42 9.57 -190.01 -1.82 -19.24 16 19 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 20 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 21 H 0.03 1.14 7.57 -2.39 -0.02 1.13 16 22 H 0.05 1.90 7.63 -2.39 -0.02 1.88 16 23 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.10 2.76 8.13 -2.39 -0.02 2.74 16 25 H 0.10 2.87 7.91 -2.39 -0.02 2.85 16 26 H 0.17 4.13 8.06 -2.91 -0.02 4.11 16 27 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 28 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.83 7.45 -2.39 -0.02 1.81 16 31 H 0.35 6.15 9.07 -89.69 -0.81 5.34 16 32 H 0.35 5.82 9.08 -89.70 -0.81 5.00 16 Total: -1.00 -67.74 271.93 2.16 -65.59 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -0.58 Total: 20.01 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 3.77 Total: -37.21 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -2.92 Total: -93.78 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.39 kcal Total: -67.74 2.16 -65.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085581855.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.440 kcal (2) G-P(sol) polarization free energy of solvation -67.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds