Wall clock time and date at job start Mon Mar 30 2020 02:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.79652 * 2 1 4 4 C 1.53708 * 109.79932 * 120.80878 * 2 1 3 5 5 C 1.46982 * 112.16251 * 198.67046 * 4 2 1 6 6 C 1.52469 * 110.37052 * 301.35759 * 5 4 2 7 7 O 1.20761 * 119.92285 * 256.87116 * 6 5 4 8 8 C 1.47864 * 120.15429 * 76.84973 * 6 5 4 9 9 C 1.55111 * 112.48235 * 269.54732 * 8 6 5 10 10 C 1.47719 * 109.80209 * 239.18704 * 2 1 3 11 11 C 1.35026 * 119.05906 * 326.19921 * 10 2 1 12 12 C 1.40074 * 120.00158 * 173.75886 * 11 10 2 13 13 H 1.07997 * 119.99692 * 352.19076 * 12 11 10 14 14 C 1.40305 * 120.00088 * 172.19711 * 12 11 10 15 15 N 1.30687 * 120.00292 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99972 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46974 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47215 * 119.99481 * 16 14 12 19 19 H 1.48499 * 109.46762 * 239.99561 * 16 14 12 20 20 H 1.08996 * 109.46918 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47088 * 300.00310 * 1 2 3 22 22 H 1.09001 * 109.47171 * 60.00189 * 1 2 3 23 23 H 1.08991 * 108.93895 * 319.46365 * 4 2 1 24 24 H 1.08998 * 108.93107 * 78.05749 * 4 2 1 25 25 H 1.08995 * 109.31793 * 181.07765 * 5 4 2 26 26 H 1.09000 * 109.29559 * 61.62413 * 5 4 2 27 27 H 1.08996 * 108.88019 * 148.77214 * 8 6 5 28 28 H 1.09004 * 108.87794 * 30.31979 * 8 6 5 29 29 H 1.08996 * 109.54703 * 279.31676 * 9 8 6 30 30 H 1.08995 * 109.62286 * 159.08561 * 9 8 6 31 31 H 1.07999 * 120.00186 * 353.75470 * 11 10 2 32 32 H 0.96996 * 120.00365 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8992 1.0256 0.0000 4 6 2.0506 -0.7407 1.2421 5 6 3.4518 -0.4099 1.5382 6 6 4.3422 -0.7606 0.3512 7 8 5.0243 -1.7566 0.3833 8 6 4.3720 0.1157 -0.8394 9 6 3.3198 -0.2929 -1.9032 10 6 2.0304 -0.7119 -1.1937 11 6 1.3298 -1.7621 -1.6726 12 6 1.7124 -2.3692 -2.8756 13 1 2.4857 -1.9233 -3.4834 14 6 1.0908 -3.5565 -3.2910 15 7 0.1553 -4.0964 -2.5553 16 14 1.6016 -4.3665 -4.8949 17 1 2.6736 -3.5632 -5.5357 18 1 2.1060 -5.7357 -4.6194 19 1 0.4307 -4.4441 -5.8050 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.4333 -0.4716 2.0991 24 1 1.9697 -1.8145 1.0733 25 1 3.7782 -0.9728 2.4126 26 1 3.5336 0.6566 1.7478 27 1 5.3642 0.0675 -1.2880 28 1 4.1777 1.1418 -0.5270 29 1 3.7007 -1.1282 -2.4908 30 1 3.1163 0.5525 -2.5604 31 1 0.4745 -2.1341 -1.1282 32 1 -0.2742 -4.9174 -2.8423 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216319566.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:32 Heat of formation + Delta-G solvation = -72.020019 kcal Electronic energy + Delta-G solvation = -13976.148147 eV Core-core repulsion = 11707.042405 eV Total energy + Delta-G solvation = -2269.105742 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.87017 -38.24512 -35.73621 -33.80514 -32.89088 -30.45825 -27.20175 -25.54287 -24.21959 -22.92111 -20.07929 -19.44093 -17.85576 -16.81054 -16.76406 -16.16062 -15.78570 -15.34865 -14.93165 -14.40509 -14.12440 -13.95412 -13.58272 -13.17412 -13.05665 -12.91981 -12.47073 -12.40378 -12.01899 -11.94584 -11.80909 -11.41571 -11.28994 -10.92641 -10.67195 -10.27354 -9.32370 -8.66540 -6.18916 1.15905 1.21595 1.33299 1.47733 1.97036 2.19968 3.38078 3.40886 3.99032 4.21018 4.33055 4.41920 4.45805 4.57731 4.76477 4.85268 4.85938 5.01629 5.11039 5.13273 5.18203 5.25084 5.31342 5.38056 5.45091 5.56471 5.63907 5.71145 6.10810 6.49968 6.71018 6.72853 7.16404 7.33266 8.39389 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.032787 B = 0.010701 C = 0.009323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.801281 B = 2615.956095 C = 3002.510004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.007 4.007 3 H 0.078 0.922 4 C -0.102 4.102 5 C -0.149 4.149 6 C 0.377 3.623 7 O -0.524 6.524 8 C -0.165 4.165 9 C -0.019 4.019 10 C -0.382 4.382 11 C 0.026 3.974 12 C -0.492 4.492 13 H 0.071 0.929 14 C 0.024 3.976 15 N -0.858 5.858 16 Si 0.976 3.024 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.262 1.262 20 H 0.027 0.973 21 H 0.068 0.932 22 H 0.042 0.958 23 H 0.084 0.916 24 H 0.019 0.981 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.557 8.325 3.930 9.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.025 4.025 3 H 0.096 0.904 4 C -0.140 4.140 5 C -0.186 4.186 6 C 0.258 3.742 7 O -0.402 6.402 8 C -0.203 4.203 9 C -0.056 4.056 10 C -0.386 4.386 11 C 0.006 3.994 12 C -0.522 4.522 13 H 0.089 0.911 14 C -0.188 4.188 15 N -0.486 5.486 16 Si 0.797 3.203 17 H -0.182 1.182 18 H -0.196 1.196 19 H -0.186 1.186 20 H 0.046 0.954 21 H 0.087 0.913 22 H 0.061 0.939 23 H 0.102 0.898 24 H 0.038 0.962 25 H 0.099 0.901 26 H 0.141 0.859 27 H 0.096 0.904 28 H 0.131 0.869 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.738 7.611 3.963 9.008 hybrid contribution -0.100 -0.975 -0.802 1.266 sum 2.638 6.637 3.162 7.810 Atomic orbital electron populations 1.21804 0.96214 1.00077 1.00872 1.19083 0.93994 0.97759 0.91675 0.90414 1.20599 0.94716 0.99294 0.99375 1.21288 0.95602 1.05384 0.96354 1.24846 0.76264 0.83039 0.90085 1.90317 1.39800 1.27328 1.82768 1.21968 1.01067 1.01485 0.95749 1.20485 0.92039 0.98725 0.94329 1.21139 1.02921 1.08152 1.06367 1.19916 0.94155 0.92347 0.92996 1.19986 1.18591 1.07226 1.06413 0.91119 1.26952 0.93045 0.97373 1.01422 1.69634 1.21408 1.18693 1.38915 0.85248 0.79360 0.78178 0.77496 1.18240 1.19566 1.18607 0.95428 0.91315 0.93881 0.89782 0.96156 0.90102 0.85925 0.90433 0.86901 0.94942 0.92289 0.92174 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.53 71.98 0.61 -4.06 16 2 C -0.01 -0.25 2.34 -12.21 -0.03 -0.28 16 3 H 0.08 2.35 7.72 -2.39 -0.02 2.34 16 4 C -0.10 -3.42 4.80 28.96 0.14 -3.29 16 5 C -0.15 -4.37 5.64 28.55 0.16 -4.21 16 6 C 0.38 14.05 5.58 28.81 0.16 14.21 16 7 O -0.52 -24.12 17.83 -1.45 -0.03 -24.15 16 8 C -0.16 -5.46 5.38 29.71 0.16 -5.30 16 9 C -0.02 -0.76 5.72 31.32 0.18 -0.58 16 10 C -0.38 -17.18 4.14 -17.34 -0.07 -17.25 16 11 C 0.03 1.38 8.20 21.98 0.18 1.57 16 12 C -0.49 -27.44 8.39 23.22 0.19 -27.25 16 13 H 0.07 3.87 5.95 -2.91 -0.02 3.85 16 14 C 0.02 1.30 5.50 85.37 0.47 1.76 16 15 N -0.86 -47.71 12.88 21.89 0.28 -47.43 16 16 Si 0.98 41.07 29.56 68.60 2.03 43.10 16 17 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 20 H 0.03 1.11 6.37 -2.39 -0.02 1.10 16 21 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 22 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.08 2.29 7.99 -2.39 -0.02 2.28 16 24 H 0.02 0.84 7.83 -2.39 -0.02 0.82 16 25 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.12 2.55 8.14 -2.39 -0.02 2.54 16 27 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.11 2.82 7.93 -2.38 -0.02 2.80 16 29 H 0.03 1.52 6.06 -2.39 -0.01 1.50 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.06 3.48 5.59 -2.91 -0.02 3.46 16 32 H 0.29 14.41 8.29 -92.71 -0.77 13.64 16 Total: -1.00 -64.11 258.40 5.54 -58.57 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.10 Total: 14.57 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 2.16 Total: -44.67 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.28 Total: -47.43 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.03 Total: -24.15 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -64.11 5.54 -58.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216319566.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.446 kcal (2) G-P(sol) polarization free energy of solvation -64.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds