Wall clock time and date at job start Mon Mar 30 2020 02:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.54600 * 2 1 4 4 C 1.53541 * 109.54379 * 120.18074 * 2 1 3 5 5 C 1.51489 * 107.29147 * 57.89933 * 4 2 1 6 6 O 1.21325 * 121.13050 * 221.90749 * 5 4 2 7 7 C 1.46666 * 117.74176 * 41.92565 * 5 4 2 8 8 C 1.32739 * 120.61287 * 348.55647 * 7 5 4 9 9 C 1.50187 * 123.23550 * 0.44811 * 8 7 5 10 10 H 1.08992 * 109.14705 * 98.44332 * 9 8 7 11 11 C 1.53002 * 109.25240 * 217.65546 * 9 8 7 12 12 C 1.50703 * 109.46492 * 296.58800 * 11 9 8 13 13 H 1.07995 * 120.00623 * 0.02562 * 12 11 9 14 14 C 1.37879 * 119.99645 * 180.02562 * 12 11 9 15 15 N 1.31515 * 120.00276 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00074 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47138 * 59.99838 * 16 14 12 18 18 H 1.48504 * 109.47222 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47260 * 300.00152 * 16 14 12 20 20 H 1.09001 * 109.47002 * 59.99864 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00130 * 1 2 3 23 23 H 1.09004 * 109.46902 * 59.99838 * 3 2 1 24 24 H 1.09001 * 109.46911 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.46848 * 299.99608 * 3 2 1 26 26 H 1.08994 * 109.89245 * 177.34542 * 4 2 1 27 27 H 1.09003 * 109.89439 * 298.38380 * 4 2 1 28 28 H 1.08007 * 119.69669 * 168.57453 * 7 5 4 29 29 H 1.08004 * 118.40394 * 180.45458 * 8 7 5 30 30 H 1.09000 * 109.47504 * 56.58678 * 11 9 8 31 31 H 1.08996 * 109.47327 * 176.59187 * 11 9 8 32 32 H 0.96994 * 120.00208 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0420 1.4419 0.0000 4 6 2.0437 -0.7274 1.2508 5 6 1.4700 -2.1292 1.2239 6 8 1.0406 -2.6506 2.2317 7 6 1.4516 -2.8348 -0.0617 8 6 1.7093 -2.1877 -1.1917 9 6 2.0413 -0.7239 -1.2447 10 1 3.1228 -0.6048 -1.3085 11 6 1.3955 -0.1048 -2.4859 12 6 1.9857 -0.7296 -3.7237 13 1 2.7451 -1.4922 -3.6342 14 6 1.5562 -0.3275 -4.9707 15 7 0.6318 0.6016 -5.0798 16 14 2.2872 -1.1024 -6.5051 17 1 2.0303 -2.5650 -6.4916 18 1 1.6605 -0.5014 -7.7099 19 1 3.7516 -0.8573 -6.5339 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.6792 1.9562 0.8900 24 1 3.1320 1.4404 0.0005 25 1 1.6793 1.9561 -0.8900 26 1 3.1326 -0.7720 1.2330 27 1 1.7086 -0.2056 2.1472 28 1 1.2259 -3.8907 -0.0894 29 1 1.6787 -2.7407 -2.1189 30 1 0.3207 -0.2855 -2.4648 31 1 1.5833 0.9688 -2.4959 32 1 0.3299 0.8847 -5.9571 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238179018.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:34 Heat of formation + Delta-G solvation = -47.691151 kcal Electronic energy + Delta-G solvation = -13946.839580 eV Core-core repulsion = 11678.788816 eV Total energy + Delta-G solvation = -2268.050763 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.91264 -37.37787 -33.21627 -32.51704 -30.31343 -27.36711 -26.87050 -25.33010 -22.72276 -21.01490 -19.38205 -16.72155 -16.58460 -15.75184 -14.97183 -14.59673 -14.38142 -13.73180 -13.47167 -13.00014 -12.76691 -12.20734 -12.13923 -11.75421 -11.52743 -11.35865 -11.02069 -10.91153 -10.68655 -10.41648 -10.36908 -10.04369 -9.46108 -9.17208 -8.97934 -8.67895 -8.42666 -6.09653 -4.12733 1.57832 3.26767 3.32557 3.33415 3.35257 4.37510 4.57630 5.00797 5.11395 5.18849 5.26349 5.60311 5.69081 5.70791 5.84424 6.01397 6.07564 6.19015 6.25514 6.33262 6.46153 6.53326 6.57273 6.72107 6.76859 6.88247 7.08417 7.55796 7.66792 7.87728 7.95808 8.28591 8.92971 9.51917 11.01062 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.043919 B = 0.009105 C = 0.008196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.379229 B = 3074.475166 C = 3415.525029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C -0.139 4.139 4 C -0.159 4.159 5 C 0.398 3.602 6 O -0.485 6.485 7 C -0.289 4.289 8 C -0.004 4.004 9 C -0.069 4.069 10 H 0.086 0.914 11 C 0.029 3.971 12 C -0.527 4.527 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.075 0.925 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.025 0.975 31 H 0.029 0.971 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.569 -0.640 7.539 7.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.053 4.053 3 C -0.196 4.196 4 C -0.197 4.197 5 C 0.279 3.721 6 O -0.363 6.363 7 C -0.308 4.308 8 C -0.023 4.023 9 C -0.087 4.087 10 H 0.104 0.896 11 C -0.007 4.007 12 C -0.565 4.565 13 H 0.074 0.926 14 C -0.141 4.141 15 N -0.531 5.531 16 Si 0.717 3.283 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 H 0.094 0.906 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.236 -0.798 7.921 8.270 hybrid contribution 0.377 -0.478 -1.118 1.273 sum 2.613 -1.276 6.804 7.399 Atomic orbital electron populations 1.22022 0.94429 1.01940 1.02185 1.20627 0.96076 0.95663 0.92938 1.21872 1.00707 0.94934 1.02108 1.22487 1.02134 0.94955 1.00122 1.22816 0.73212 0.88180 0.87887 1.90476 1.38521 1.69791 1.37543 1.22930 1.12936 1.00973 0.93960 1.23988 0.83974 0.96658 0.97645 1.20567 1.00978 0.90671 0.96461 0.89611 1.19248 0.96161 0.96286 0.89054 1.21210 1.22306 1.22045 0.90972 0.92592 1.24986 0.95001 0.95038 0.99100 1.69934 1.29391 1.29662 1.24074 0.86704 0.79413 0.79567 0.82605 1.20249 1.21295 1.20231 0.90636 0.92948 0.93438 0.93272 0.92786 0.91011 0.88673 0.89793 0.86022 0.85482 0.95700 0.95307 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 7.51 37.16 0.28 -2.17 16 2 C -0.05 -0.84 0.55 -154.33 -0.08 -0.92 16 3 C -0.14 -2.01 8.27 37.16 0.31 -1.71 16 4 C -0.16 -2.33 5.08 -27.21 -0.14 -2.47 16 5 C 0.40 6.79 5.77 -30.52 -0.18 6.61 16 6 O -0.48 -9.50 17.93 5.52 0.10 -9.41 16 7 C -0.29 -4.82 9.37 -38.06 -0.36 -5.17 16 8 C 0.00 -0.07 8.39 -36.44 -0.31 -0.38 16 9 C -0.07 -1.25 1.59 -92.12 -0.15 -1.40 16 10 H 0.09 1.54 8.13 -51.93 -0.42 1.11 16 11 C 0.03 0.67 3.60 -27.88 -0.10 0.57 16 12 C -0.53 -13.46 8.24 -34.44 -0.28 -13.74 16 13 H 0.06 1.37 7.33 -52.49 -0.38 0.99 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 16 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H 0.07 1.34 6.43 -51.93 -0.33 1.01 16 21 H 0.05 0.90 6.18 -51.93 -0.32 0.58 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.16 6.51 -51.93 -0.34 0.82 16 26 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 29 H 0.13 2.31 7.16 -52.48 -0.38 1.93 16 30 H 0.02 0.61 6.61 -51.93 -0.34 0.27 16 31 H 0.03 0.70 6.39 -51.93 -0.33 0.36 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 257.70 15.07 3.88 3.88 Total: -1.00 -28.27 257.70 -5.93 -34.20 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.52 Total: -0.45 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -1.10 Total: -19.25 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.74 Total: -24.47 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.10 Total: -9.41 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.27 -5.93 -34.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238179018.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.496 kcal (2) G-P(sol) polarization free energy of solvation -28.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds