Wall clock time and date at job start Mon Mar 30 2020 02:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.54600 * 2 1 4 4 C 1.53541 * 109.54379 * 120.18074 * 2 1 3 5 5 C 1.51489 * 107.29147 * 57.89933 * 4 2 1 6 6 O 1.21325 * 121.13050 * 221.90749 * 5 4 2 7 7 C 1.46666 * 117.74176 * 41.92565 * 5 4 2 8 8 C 1.32739 * 120.61287 * 348.55647 * 7 5 4 9 9 C 1.50187 * 123.23550 * 0.44811 * 8 7 5 10 10 H 1.08992 * 109.14705 * 98.44332 * 9 8 7 11 11 C 1.53002 * 109.25240 * 217.65546 * 9 8 7 12 12 C 1.50703 * 109.46492 * 296.58800 * 11 9 8 13 13 H 1.07995 * 120.00623 * 0.02562 * 12 11 9 14 14 C 1.37879 * 119.99645 * 180.02562 * 12 11 9 15 15 N 1.31515 * 120.00276 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00074 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47138 * 59.99838 * 16 14 12 18 18 H 1.48504 * 109.47222 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47260 * 300.00152 * 16 14 12 20 20 H 1.09001 * 109.47002 * 59.99864 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00130 * 1 2 3 23 23 H 1.09004 * 109.46902 * 59.99838 * 3 2 1 24 24 H 1.09001 * 109.46911 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.46848 * 299.99608 * 3 2 1 26 26 H 1.08994 * 109.89245 * 177.34542 * 4 2 1 27 27 H 1.09003 * 109.89439 * 298.38380 * 4 2 1 28 28 H 1.08007 * 119.69669 * 168.57453 * 7 5 4 29 29 H 1.08004 * 118.40394 * 180.45458 * 8 7 5 30 30 H 1.09000 * 109.47504 * 56.58678 * 11 9 8 31 31 H 1.08996 * 109.47327 * 176.59187 * 11 9 8 32 32 H 0.96994 * 120.00208 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0420 1.4419 0.0000 4 6 2.0437 -0.7274 1.2508 5 6 1.4700 -2.1292 1.2239 6 8 1.0406 -2.6506 2.2317 7 6 1.4516 -2.8348 -0.0617 8 6 1.7093 -2.1877 -1.1917 9 6 2.0413 -0.7239 -1.2447 10 1 3.1228 -0.6048 -1.3085 11 6 1.3955 -0.1048 -2.4859 12 6 1.9857 -0.7296 -3.7237 13 1 2.7451 -1.4922 -3.6342 14 6 1.5562 -0.3275 -4.9707 15 7 0.6318 0.6016 -5.0798 16 14 2.2872 -1.1024 -6.5051 17 1 2.0303 -2.5650 -6.4916 18 1 1.6605 -0.5014 -7.7099 19 1 3.7516 -0.8573 -6.5339 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.6792 1.9562 0.8900 24 1 3.1320 1.4404 0.0005 25 1 1.6793 1.9561 -0.8900 26 1 3.1326 -0.7720 1.2330 27 1 1.7086 -0.2056 2.1472 28 1 1.2259 -3.8907 -0.0894 29 1 1.6787 -2.7407 -2.1189 30 1 0.3207 -0.2855 -2.4648 31 1 1.5833 0.9688 -2.4959 32 1 0.3299 0.8847 -5.9571 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238179018.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:34 Heat of formation + Delta-G solvation = -62.982879 kcal Electronic energy + Delta-G solvation = -13947.502679 eV Core-core repulsion = 11678.788816 eV Total energy + Delta-G solvation = -2268.713862 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.28785 -38.81832 -35.09634 -33.92072 -31.99972 -28.75032 -28.15135 -27.02224 -24.38828 -22.51138 -20.75977 -18.50793 -18.06085 -17.16232 -16.53139 -16.36110 -15.77554 -15.12480 -14.95373 -14.38938 -14.18672 -13.90650 -13.67902 -13.26977 -12.88869 -12.80052 -12.63004 -12.57214 -12.14462 -12.02790 -11.80182 -11.63790 -11.18992 -10.83170 -10.50820 -10.33984 -10.12957 -8.13913 -6.22183 0.19290 1.44497 1.44651 1.52135 1.98721 2.44620 3.20532 3.28803 3.72063 3.77881 3.90637 4.28913 4.37193 4.42026 4.62459 4.74210 4.82228 4.91952 4.92758 5.01271 5.13414 5.15173 5.25212 5.39155 5.43086 5.48897 5.60005 5.64742 5.84203 5.92473 6.30482 6.60912 6.94612 7.46131 8.96930 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.043919 B = 0.009105 C = 0.008196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.379229 B = 3074.475166 C = 3415.525029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C -0.136 4.136 4 C -0.150 4.150 5 C 0.398 3.602 6 O -0.510 6.510 7 C -0.277 4.277 8 C -0.013 4.013 9 C -0.061 4.061 10 H 0.093 0.907 11 C 0.038 3.962 12 C -0.534 4.534 13 H 0.064 0.936 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.951 3.049 17 H -0.270 1.270 18 H -0.290 1.290 19 H -0.268 1.268 20 H 0.052 0.948 21 H 0.040 0.960 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.132 0.868 29 H 0.118 0.882 30 H -0.001 1.001 31 H 0.010 0.990 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.808 -1.021 8.505 9.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.049 4.049 3 C -0.193 4.193 4 C -0.187 4.187 5 C 0.281 3.719 6 O -0.391 6.391 7 C -0.296 4.296 8 C -0.032 4.032 9 C -0.079 4.079 10 H 0.111 0.889 11 C 0.001 3.999 12 C -0.572 4.572 13 H 0.083 0.917 14 C -0.193 4.193 15 N -0.571 5.571 16 Si 0.777 3.223 17 H -0.195 1.195 18 H -0.216 1.216 19 H -0.193 1.193 20 H 0.071 0.929 21 H 0.059 0.941 22 H 0.087 0.913 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.138 0.862 27 H 0.120 0.880 28 H 0.149 0.851 29 H 0.135 0.865 30 H 0.017 0.983 31 H 0.028 0.972 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.490 -1.187 8.890 9.624 hybrid contribution -0.039 -0.372 -1.392 1.441 sum 3.452 -1.559 7.498 8.400 Atomic orbital electron populations 1.21994 0.95192 1.01110 1.02106 1.20580 0.95434 0.96492 0.92403 1.21836 1.01627 0.93725 1.02104 1.22468 1.03470 0.92951 0.99795 1.23134 0.72416 0.89108 0.87264 1.90479 1.39717 1.70634 1.38227 1.23037 1.11343 1.01508 0.93705 1.23812 0.85390 0.96322 0.97663 1.20414 1.00998 0.90985 0.95520 0.88879 1.19056 0.94792 0.95329 0.90709 1.21693 1.21898 1.21659 0.91980 0.91742 1.25814 0.95530 0.95646 1.02353 1.70068 1.31097 1.31405 1.24539 0.85708 0.78883 0.78867 0.78832 1.19469 1.21597 1.19310 0.92891 0.94128 0.91329 0.90893 0.91321 0.93406 0.86195 0.87964 0.85052 0.86453 0.98290 0.97187 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 7.51 71.98 0.54 -4.17 16 2 C -0.05 -1.45 0.55 -52.06 -0.03 -1.48 16 3 C -0.14 -3.63 8.27 71.98 0.60 -3.04 16 4 C -0.15 -3.87 5.08 30.28 0.15 -3.71 16 5 C 0.40 12.61 5.77 28.14 0.16 12.78 16 6 O -0.51 -18.92 17.93 -3.17 -0.06 -18.98 16 7 C -0.28 -8.77 9.37 23.30 0.22 -8.55 16 8 C -0.01 -0.45 8.39 24.35 0.20 -0.25 16 9 C -0.06 -2.17 1.59 -11.77 -0.02 -2.19 16 10 H 0.09 3.16 8.13 -2.39 -0.02 3.14 16 11 C 0.04 1.76 3.60 29.85 0.11 1.87 16 12 C -0.53 -27.35 8.24 25.60 0.21 -27.14 16 13 H 0.06 3.12 7.33 -2.91 -0.02 3.10 16 14 C 0.00 0.24 5.46 84.65 0.46 0.71 16 15 N -0.93 -53.74 13.29 21.45 0.28 -53.46 16 16 Si 0.95 42.07 29.54 68.60 2.03 44.10 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H 0.05 1.92 6.43 -2.39 -0.02 1.90 16 21 H 0.04 1.37 6.18 -2.39 -0.01 1.35 16 22 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 23 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 24 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.05 1.51 6.51 -2.39 -0.02 1.50 16 26 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 29 H 0.12 4.23 7.16 -2.91 -0.02 4.21 16 30 H 0.00 -0.06 6.61 -2.39 -0.02 -0.08 16 31 H 0.01 0.49 6.39 -2.39 -0.02 0.48 16 32 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -60.09 257.70 5.95 -54.14 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.09 Total: 9.37 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 2.61 Total: -35.18 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.28 Total: -53.46 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.06 Total: -18.98 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -60.09 5.95 -54.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238179018.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.843 kcal (2) G-P(sol) polarization free energy of solvation -60.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds