Wall clock time and date at job start Mon Mar 30 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29449 * 117.95845 * 2 1 4 4 C 1.50066 * 124.07421 * 180.47059 * 3 2 1 5 5 C 1.53027 * 110.14690 * 342.87319 * 4 3 2 6 6 C 1.53387 * 108.43957 * 49.43538 * 5 4 3 7 7 C 1.50695 * 109.64339 * 52.24892 * 6 5 4 8 8 O 1.20759 * 120.00604 * 233.90316 * 7 6 5 9 9 C 1.53000 * 109.64547 * 172.87959 * 6 5 4 10 10 C 1.50701 * 109.47536 * 179.97438 * 9 6 5 11 11 H 1.07994 * 119.99750 * 359.97438 * 10 9 6 12 12 C 1.37876 * 119.99982 * 180.02562 * 10 9 6 13 13 N 1.31518 * 119.99961 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99989 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47124 * 90.00188 * 14 12 10 16 16 H 1.48500 * 109.47080 * 209.99648 * 14 12 10 17 17 H 1.48491 * 109.47210 * 330.00040 * 14 12 10 18 18 C 1.50063 * 117.96573 * 180.02562 * 2 1 3 19 19 H 1.08997 * 109.47499 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47359 * 119.99958 * 1 2 3 21 21 H 1.09006 * 109.47171 * 239.99546 * 1 2 3 22 22 H 1.07998 * 117.95809 * 0.49748 * 3 2 1 23 23 H 1.08998 * 109.36065 * 222.66860 * 4 3 2 24 24 H 1.08998 * 109.24757 * 103.00864 * 4 3 2 25 25 H 1.09001 * 109.64471 * 169.12507 * 5 4 3 26 26 H 1.09004 * 109.63911 * 289.75082 * 5 4 3 27 27 H 1.08003 * 120.00157 * 53.90006 * 7 6 5 28 28 H 1.09004 * 109.46982 * 300.00478 * 9 6 5 29 29 H 1.09003 * 109.47047 * 60.00076 * 9 6 5 30 30 H 0.96999 * 120.00159 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.36053 * 283.07476 * 18 2 1 32 32 H 1.09004 * 109.35856 * 42.80065 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1434 0.0000 4 6 3.6059 1.3033 -0.0102 5 6 4.2793 -0.0073 0.4029 6 6 3.6704 -1.1471 -0.4233 7 6 3.7343 -0.8008 -1.8886 8 8 2.7316 -0.8319 -2.5607 9 6 4.4433 -2.4415 -0.1623 10 6 3.8416 -3.5586 -0.9753 11 1 2.9926 -3.3649 -1.6139 12 6 4.3745 -4.8282 -0.9029 13 7 3.8497 -5.8031 -1.6128 14 14 5.8417 -5.1637 0.2036 15 1 5.3641 -5.5560 1.5538 16 1 6.6549 -6.2644 -0.3729 17 1 6.6725 -3.9375 0.3093 18 6 2.2107 -1.3254 -0.0006 19 1 -0.3634 1.0276 0.0005 20 1 -0.3634 -0.5138 -0.8900 21 1 -0.3634 -0.5139 0.8900 22 1 1.5087 2.0379 0.0083 23 1 3.8897 2.0909 0.6878 24 1 3.9313 1.5758 -1.0142 25 1 5.3502 0.0541 0.2094 26 1 4.1055 -0.1900 1.4634 27 1 4.6770 -0.5247 -2.3376 28 1 5.4866 -2.3054 -0.4471 29 1 4.3856 -2.6917 0.8971 30 1 4.2243 -6.6964 -1.5616 31 1 2.1747 -1.7541 1.0009 32 1 1.7137 -1.9981 -0.6996 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238233217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:08 Heat of formation + Delta-G solvation = -60.322192 kcal Electronic energy + Delta-G solvation = -14079.383940 eV Core-core repulsion = 11810.785454 eV Total energy + Delta-G solvation = -2268.598486 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.27643 -38.30624 -35.62026 -34.09329 -32.58324 -29.26124 -27.62292 -25.77196 -24.28580 -23.17283 -20.44416 -18.90915 -18.29045 -16.89410 -16.57612 -16.20871 -15.54323 -15.26973 -14.73365 -14.53690 -14.31459 -14.15486 -13.59634 -13.47918 -12.98188 -12.94251 -12.61890 -12.53362 -12.42417 -12.24184 -11.78314 -11.62139 -10.89152 -10.85612 -10.75120 -10.17133 -9.52707 -8.25005 -6.30282 1.32286 1.39799 1.43017 1.45139 1.52900 2.38940 3.10483 3.50428 3.77354 3.89416 4.12220 4.36130 4.38222 4.53908 4.66543 4.74239 4.76670 4.82635 4.95476 5.05525 5.08826 5.14875 5.21457 5.27326 5.28884 5.43289 5.51127 5.67364 5.86301 6.23242 6.31167 6.69582 6.81157 7.34013 8.92072 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.039387 B = 0.010466 C = 0.009761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.724212 B = 2674.631498 C = 2867.911922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.131 4.131 3 C -0.173 4.173 4 C -0.090 4.090 5 C -0.100 4.100 6 C -0.112 4.112 7 C 0.370 3.630 8 O -0.504 6.504 9 C 0.006 3.994 10 C -0.526 4.526 11 H 0.026 0.974 12 C 0.001 3.999 13 N -0.956 5.956 14 Si 0.951 3.049 15 H -0.270 1.270 16 H -0.291 1.291 17 H -0.231 1.231 18 C -0.053 4.053 19 H 0.076 0.924 20 H 0.046 0.954 21 H 0.067 0.933 22 H 0.116 0.884 23 H 0.101 0.899 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.041 0.959 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.067 0.933 32 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.438 14.630 6.876 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.131 4.131 3 C -0.191 4.191 4 C -0.127 4.127 5 C -0.137 4.137 6 C -0.113 4.113 7 C 0.229 3.771 8 O -0.377 6.377 9 C -0.031 4.031 10 C -0.564 4.564 11 H 0.044 0.956 12 C -0.195 4.195 13 N -0.597 5.597 14 Si 0.774 3.226 15 H -0.195 1.195 16 H -0.217 1.217 17 H -0.154 1.154 18 C -0.090 4.090 19 H 0.095 0.905 20 H 0.065 0.935 21 H 0.086 0.914 22 H 0.134 0.866 23 H 0.119 0.881 24 H 0.089 0.911 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.897 14.456 6.474 15.953 hybrid contribution 0.055 -1.170 -0.037 1.172 sum 1.952 13.286 6.437 14.891 Atomic orbital electron populations 1.20930 0.92309 1.02680 1.01460 1.21048 0.96476 0.94927 1.00619 1.22111 0.97240 0.96633 1.03071 1.20539 0.91798 0.98095 1.02246 1.21662 1.00575 0.91933 0.99569 1.21441 0.96734 0.97695 0.95396 1.26143 0.92139 0.68451 0.90393 1.90284 1.41442 1.40816 1.65146 1.19514 0.96009 0.90815 0.96809 1.21448 1.15033 0.94263 1.25670 0.95594 1.26084 1.00468 0.95837 0.97145 1.70112 1.43852 1.02120 1.43567 0.85648 0.79246 0.79146 0.78542 1.19526 1.21692 1.15397 1.20056 0.94174 0.94603 1.00207 0.90464 0.93539 0.91429 0.86641 0.88072 0.91094 0.88849 0.90473 0.87192 0.94088 0.94912 0.92731 0.91509 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.42 9.98 71.23 0.71 -2.70 16 2 C -0.13 -4.29 5.13 -15.11 -0.08 -4.37 16 3 C -0.17 -4.72 9.22 27.03 0.25 -4.47 16 4 C -0.09 -2.06 5.60 29.66 0.17 -1.90 16 5 C -0.10 -2.61 4.94 30.73 0.15 -2.46 16 6 C -0.11 -4.12 0.52 -52.80 -0.03 -4.14 16 7 C 0.37 14.35 7.60 71.23 0.54 14.89 16 8 O -0.50 -23.51 16.15 -1.45 -0.02 -23.53 16 9 C 0.01 0.25 3.10 29.85 0.09 0.35 16 10 C -0.53 -29.64 8.48 25.60 0.22 -29.43 16 11 H 0.03 1.69 6.75 -2.91 -0.02 1.67 16 12 C 0.00 0.05 5.47 84.65 0.46 0.51 16 13 N -0.96 -60.72 13.96 21.45 0.30 -60.42 16 14 Si 0.95 42.71 27.47 68.60 1.88 44.59 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 17 H -0.23 -9.08 6.54 99.48 0.65 -8.43 16 18 C -0.05 -2.12 3.81 29.65 0.11 -2.00 16 19 H 0.08 1.83 7.56 -2.39 -0.02 1.81 16 20 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 22 H 0.12 2.67 7.56 -2.91 -0.02 2.65 16 23 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.07 1.58 7.41 -2.39 -0.02 1.57 16 25 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.08 1.93 8.12 -2.38 -0.02 1.91 16 27 H 0.11 3.43 8.06 -2.91 -0.02 3.41 16 28 H 0.04 1.63 7.20 -2.38 -0.02 1.62 16 29 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 30 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 31 H 0.07 2.60 8.10 -2.39 -0.02 2.58 16 32 H 0.04 1.83 6.58 -2.38 -0.02 1.82 16 Total: -1.00 -70.51 257.95 5.79 -64.73 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.03 Total: 10.36 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 2.60 Total: -35.73 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.30 Total: -60.42 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.02 Total: -23.53 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.88 Total: 44.59 kcal Total: -70.51 5.79 -64.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238233217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.406 kcal (2) G-P(sol) polarization free energy of solvation -70.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds