Wall clock time and date at job start Mon Mar 30 2020 02:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47081 * 2 1 4 4 C 1.50696 * 109.47372 * 180.02562 * 3 2 1 5 5 N 1.34127 * 125.98998 * 270.30200 * 4 3 2 6 6 C 1.30492 * 109.26028 * 180.11347 * 5 4 3 7 7 C 1.50706 * 125.65337 * 179.89427 * 6 5 4 8 8 C 1.50699 * 109.46817 * 304.68984 * 7 6 5 9 9 H 1.08003 * 119.99962 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00270 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00302 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99832 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.46901 * 89.99815 * 12 10 8 14 14 H 1.48495 * 109.47068 * 210.00475 * 12 10 8 15 15 H 1.48508 * 109.46958 * 330.00281 * 12 10 8 16 16 N 1.35047 * 108.69816 * 359.62647 * 6 5 4 17 17 H 0.96996 * 126.39671 * 180.20955 * 16 6 5 18 18 C 1.34670 * 125.99452 * 89.99636 * 4 3 2 19 19 C 1.50706 * 126.58554 * 0.07364 * 18 4 3 20 20 H 1.09001 * 109.46811 * 299.99886 * 1 2 3 21 21 H 1.08997 * 109.47135 * 59.99799 * 1 2 3 22 22 H 1.08999 * 109.47127 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47014 * 240.00568 * 2 1 3 24 24 H 1.08991 * 109.47535 * 120.00108 * 2 1 3 25 25 H 1.08998 * 109.47101 * 59.99827 * 3 2 1 26 26 H 1.09004 * 109.47008 * 300.00283 * 3 2 1 27 27 H 1.09000 * 109.47318 * 64.68364 * 7 6 5 28 28 H 1.09000 * 109.47161 * 184.68994 * 7 6 5 29 29 H 0.97002 * 119.99998 * 180.02562 * 11 10 8 30 30 H 1.08994 * 109.46815 * 269.97718 * 19 18 4 31 31 H 1.09001 * 109.47241 * 29.98182 * 19 18 4 32 32 H 1.09000 * 109.46381 * 149.98197 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.3356 1.4368 1.0843 6 6 5.5852 1.4413 0.7081 7 6 6.7793 1.4395 1.6275 8 6 6.6814 2.6029 2.5803 9 1 5.8390 3.2766 2.5252 10 6 7.6678 2.8081 3.5215 11 7 7.5821 3.8232 4.3533 12 14 9.1252 1.6434 3.6162 13 1 10.2116 2.1372 2.7325 14 1 9.6166 1.5783 5.0160 15 1 8.7057 0.2888 3.1753 16 7 5.6310 1.4419 -0.6416 17 1 6.4308 1.4421 -1.1903 18 6 4.3380 1.4427 -1.0905 19 6 3.8862 1.4444 -2.5283 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 6.8012 0.5078 2.1929 28 1 7.6918 1.5283 1.0380 29 1 8.2763 3.9677 5.0153 30 1 3.7767 0.4172 -2.8758 31 1 2.9286 1.9589 -2.6077 32 1 4.6268 1.9583 -3.1411 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258786505.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:18 Heat of formation + Delta-G solvation = 26.058765 kcal Electronic energy + Delta-G solvation = -13283.984062 eV Core-core repulsion = 11051.424086 eV Total energy + Delta-G solvation = -2232.559976 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.43456 -35.06915 -33.27561 -32.09296 -31.36496 -29.41061 -27.34361 -24.63096 -22.47291 -21.41239 -19.95104 -18.94491 -16.80618 -16.47750 -14.87125 -14.72561 -14.19050 -13.87782 -13.35764 -13.00576 -12.79189 -12.60976 -12.30814 -12.01161 -11.94812 -11.63989 -11.17986 -11.04117 -10.67093 -10.50024 -10.41621 -10.03788 -9.35554 -9.11750 -9.03729 -8.57671 -7.35295 -6.04180 -4.02932 2.65776 3.27017 3.35929 3.36858 3.75111 3.88256 4.41076 5.05705 5.19474 5.25983 5.31598 5.33366 5.36834 5.56261 5.66962 5.75397 5.94968 5.99669 6.01695 6.07918 6.16040 6.23405 6.50609 6.55042 6.78899 6.87903 7.06835 7.47312 7.61671 8.08374 8.53955 8.98906 9.06751 9.53535 11.09034 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.042513 B = 0.007328 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.470063 B = 3820.150465 C = 4136.909585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.030 4.030 4 C 0.003 3.997 5 N -0.482 5.482 6 C 0.266 3.734 7 C 0.063 3.937 8 C -0.504 4.504 9 H 0.081 0.919 10 C 0.069 3.931 11 N -0.897 5.897 12 Si 0.875 3.125 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.265 1.265 16 N -0.575 5.575 17 H 0.410 0.590 18 C -0.063 4.063 19 C -0.066 4.066 20 H 0.054 0.946 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.026 0.974 29 H 0.264 0.736 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 -6.966 -12.843 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.068 4.068 4 C -0.127 4.127 5 N -0.201 5.201 6 C 0.002 3.998 7 C 0.024 3.976 8 C -0.543 4.543 9 H 0.099 0.901 10 C -0.132 4.132 11 N -0.536 5.536 12 Si 0.702 3.298 13 H -0.203 1.203 14 H -0.210 1.210 15 H -0.190 1.190 16 N -0.179 5.179 17 H 0.247 0.753 18 C -0.177 4.177 19 C -0.124 4.124 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.687 -6.882 -11.856 15.717 hybrid contribution 1.613 -0.431 -0.930 1.911 sum -6.074 -7.313 -12.786 15.933 Atomic orbital electron populations 1.21782 0.96174 1.01186 1.01638 1.21457 0.94900 0.96878 1.02132 1.19793 0.88304 0.96649 1.02078 1.20445 0.95686 1.07975 0.88564 1.70229 0.99991 1.20643 1.29188 1.23854 0.95909 0.99637 0.80406 1.18257 0.86893 0.99868 0.92564 1.20846 1.09080 1.09839 1.14560 0.90139 1.24950 0.97875 0.95210 0.95197 1.69890 1.34496 1.29220 1.19984 0.86861 0.83134 0.82108 0.77685 1.20262 1.21018 1.18985 1.43283 1.07473 1.58553 1.08560 0.75326 1.20729 0.84386 1.15909 0.96650 1.20067 1.01265 1.01686 0.89378 0.92667 0.93006 0.93109 0.92507 0.91724 0.90888 0.91606 0.93600 0.95639 0.92575 0.91890 0.90653 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 3 C -0.03 -0.46 5.55 -27.88 -0.15 -0.61 16 4 C 0.00 0.06 6.35 -82.86 -0.53 -0.47 16 5 N -0.48 -11.42 11.21 -7.07 -0.08 -11.50 16 6 C 0.27 6.04 7.37 -155.42 -1.15 4.90 16 7 C 0.06 1.54 4.67 -29.03 -0.14 1.40 16 8 C -0.50 -14.72 9.62 -34.44 -0.33 -15.05 16 9 H 0.08 2.64 7.98 -52.48 -0.42 2.22 16 10 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 11 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 12 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 16 N -0.58 -10.44 6.15 -6.54 -0.04 -10.48 16 17 H 0.41 5.98 8.96 -40.82 -0.37 5.61 16 18 C -0.06 -1.06 7.24 -81.60 -0.59 -1.65 16 19 C -0.07 -0.78 10.22 36.01 0.37 -0.41 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.07 0.84 7.17 -51.93 -0.37 0.47 16 27 H 0.05 1.12 7.20 -51.93 -0.37 0.75 16 28 H 0.03 0.57 7.57 -51.93 -0.39 0.17 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.79 7.17 -51.93 -0.37 0.42 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 271.36 15.07 4.09 4.09 Total: -1.00 -33.24 271.36 -7.17 -40.41 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.85 Total: 0.95 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -2.40 Total: -12.88 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.65 Total: -49.04 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.24 -7.17 -40.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258786505.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.470 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds