Wall clock time and date at job start Mon Mar 30 2020 02:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47081 * 2 1 4 4 C 1.50696 * 109.47372 * 180.02562 * 3 2 1 5 5 N 1.34127 * 125.98998 * 270.30200 * 4 3 2 6 6 C 1.30492 * 109.26028 * 180.11347 * 5 4 3 7 7 C 1.50706 * 125.65337 * 179.89427 * 6 5 4 8 8 C 1.50699 * 109.46817 * 304.68984 * 7 6 5 9 9 H 1.08003 * 119.99962 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00270 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00302 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99832 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.46901 * 89.99815 * 12 10 8 14 14 H 1.48495 * 109.47068 * 210.00475 * 12 10 8 15 15 H 1.48508 * 109.46958 * 330.00281 * 12 10 8 16 16 N 1.35047 * 108.69816 * 359.62647 * 6 5 4 17 17 H 0.96996 * 126.39671 * 180.20955 * 16 6 5 18 18 C 1.34670 * 125.99452 * 89.99636 * 4 3 2 19 19 C 1.50706 * 126.58554 * 0.07364 * 18 4 3 20 20 H 1.09001 * 109.46811 * 299.99886 * 1 2 3 21 21 H 1.08997 * 109.47135 * 59.99799 * 1 2 3 22 22 H 1.08999 * 109.47127 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47014 * 240.00568 * 2 1 3 24 24 H 1.08991 * 109.47535 * 120.00108 * 2 1 3 25 25 H 1.08998 * 109.47101 * 59.99827 * 3 2 1 26 26 H 1.09004 * 109.47008 * 300.00283 * 3 2 1 27 27 H 1.09000 * 109.47318 * 64.68364 * 7 6 5 28 28 H 1.09000 * 109.47161 * 184.68994 * 7 6 5 29 29 H 0.97002 * 119.99998 * 180.02562 * 11 10 8 30 30 H 1.08994 * 109.46815 * 269.97718 * 19 18 4 31 31 H 1.09001 * 109.47241 * 29.98182 * 19 18 4 32 32 H 1.09000 * 109.46381 * 149.98197 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.3356 1.4368 1.0843 6 6 5.5852 1.4413 0.7081 7 6 6.7793 1.4395 1.6275 8 6 6.6814 2.6029 2.5803 9 1 5.8390 3.2766 2.5252 10 6 7.6678 2.8081 3.5215 11 7 7.5821 3.8232 4.3533 12 14 9.1252 1.6434 3.6162 13 1 10.2116 2.1372 2.7325 14 1 9.6166 1.5783 5.0160 15 1 8.7057 0.2888 3.1753 16 7 5.6310 1.4419 -0.6416 17 1 6.4308 1.4421 -1.1903 18 6 4.3380 1.4427 -1.0905 19 6 3.8862 1.4444 -2.5283 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 6.8012 0.5078 2.1929 28 1 7.6918 1.5283 1.0380 29 1 8.2763 3.9677 5.0153 30 1 3.7767 0.4172 -2.8758 31 1 2.9286 1.9589 -2.6077 32 1 4.6268 1.9583 -3.1411 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258786505.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:18 Heat of formation + Delta-G solvation = 3.492924 kcal Electronic energy + Delta-G solvation = -13284.962590 eV Core-core repulsion = 11051.424086 eV Total energy + Delta-G solvation = -2233.538504 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.93701 -36.28143 -35.26129 -33.65576 -32.87761 -31.09065 -28.47878 -26.27486 -24.17590 -22.52867 -21.59220 -20.39607 -18.92275 -18.03050 -16.46714 -16.13537 -15.81755 -15.08207 -14.86440 -14.51692 -14.11261 -13.89044 -13.77401 -13.42461 -13.22894 -12.77402 -12.61580 -12.41325 -12.21508 -12.06081 -11.88845 -11.62101 -11.49127 -10.80017 -10.68487 -10.58307 -8.81500 -8.28462 -6.34964 1.20911 1.36820 1.41498 1.52374 2.28264 2.35504 2.36409 3.05022 3.72302 4.07420 4.19316 4.30980 4.32720 4.39855 4.56475 4.73310 4.76068 4.82329 4.92631 4.99092 5.08474 5.14025 5.17966 5.25541 5.43299 5.46009 5.52977 5.55458 6.04245 6.24045 6.64509 6.77027 7.26445 7.45137 8.89036 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.042513 B = 0.007328 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.470063 B = 3820.150465 C = 4136.909585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.027 4.027 4 C -0.036 4.036 5 N -0.530 5.530 6 C 0.225 3.775 7 C 0.071 3.929 8 C -0.517 4.517 9 H 0.021 0.979 10 C 0.005 3.995 11 N -0.951 5.951 12 Si 0.958 3.042 13 H -0.257 1.257 14 H -0.283 1.283 15 H -0.244 1.244 16 N -0.561 5.561 17 H 0.428 0.572 18 C -0.036 4.036 19 C -0.064 4.064 20 H 0.048 0.952 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.269 0.731 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.047 -8.634 -15.676 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.066 4.066 4 C -0.165 4.165 5 N -0.250 5.250 6 C -0.040 4.040 7 C 0.032 3.968 8 C -0.556 4.556 9 H 0.039 0.961 10 C -0.192 4.192 11 N -0.591 5.591 12 Si 0.780 3.220 13 H -0.181 1.181 14 H -0.209 1.209 15 H -0.167 1.167 16 N -0.166 5.166 17 H 0.267 0.733 18 C -0.151 4.151 19 C -0.122 4.122 20 H 0.067 0.933 21 H 0.090 0.910 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.296 -8.555 -14.724 18.526 hybrid contribution 1.356 0.167 -0.102 1.370 sum -5.940 -8.388 -14.827 18.041 Atomic orbital electron populations 1.21742 0.93916 1.02256 1.02312 1.21390 0.96771 0.95248 1.01281 1.19905 0.86122 0.98091 1.02438 1.21138 0.97477 1.09565 0.88275 1.70097 1.01360 1.21324 1.32255 1.23372 0.95227 1.03189 0.82163 1.18025 0.89089 0.97308 0.92337 1.20991 1.07392 1.10754 1.16458 0.96086 1.26038 1.01666 0.97209 0.94245 1.70073 1.36174 1.31749 1.21120 0.85557 0.78366 0.80025 0.78047 1.18100 1.20910 1.16712 1.43171 1.08902 1.57298 1.07206 0.73256 1.21593 0.83208 1.11618 0.98726 1.20301 1.02535 1.03804 0.85573 0.93315 0.91024 0.91857 0.91223 0.94671 0.93127 0.88532 0.93824 0.92864 0.92260 0.89473 0.88854 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.91 71.98 0.71 -2.05 16 2 C -0.11 -2.76 5.92 30.60 0.18 -2.58 16 3 C -0.03 -0.81 5.55 29.85 0.17 -0.65 16 4 C -0.04 -1.38 6.35 41.39 0.26 -1.12 16 5 N -0.53 -26.02 11.21 -176.29 -1.98 -27.99 16 6 C 0.22 10.34 7.37 138.13 1.02 11.36 16 7 C 0.07 3.50 4.67 29.10 0.14 3.63 16 8 C -0.52 -31.48 9.62 25.60 0.25 -31.24 16 9 H 0.02 1.47 7.98 -2.91 -0.02 1.45 16 10 C 0.01 0.30 5.47 84.65 0.46 0.77 16 11 N -0.95 -61.26 13.96 21.45 0.30 -60.96 16 12 Si 0.96 43.59 27.47 68.60 1.88 45.47 16 13 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 16 N -0.56 -19.52 6.15 -174.60 -1.07 -20.59 16 17 H 0.43 11.39 8.96 -92.71 -0.83 10.56 16 18 C -0.04 -1.14 7.24 40.96 0.30 -0.85 16 19 C -0.06 -1.22 10.22 71.24 0.73 -0.49 16 20 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 21 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.10 2.22 7.17 -2.38 -0.02 2.20 16 27 H 0.04 2.13 7.20 -2.39 -0.02 2.11 16 28 H 0.05 2.28 7.57 -2.39 -0.02 2.26 16 29 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.50 7.17 -2.39 -0.02 1.48 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -77.42 271.36 3.56 -73.86 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.21 Total: 13.44 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 4.21 Total: -23.21 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -2.75 Total: -109.55 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Total: -77.42 3.56 -73.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258786505.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.353 kcal (2) G-P(sol) polarization free energy of solvation -77.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds