Wall clock time and date at job start Mon Mar 30 2020 02:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48503 * 109.47091 * 240.00390 * 3 2 1 5 5 H 1.48497 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47364 * 120.00415 * 3 2 1 7 7 C 1.37878 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99882 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47282 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.47385 * 179.97438 * 10 9 7 12 12 C 1.46901 * 111.00357 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47271 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47085 * 179.97438 * 13 12 11 15 15 C 1.40900 * 126.29168 * 270.29645 * 14 13 12 16 16 C 1.34850 * 107.41621 * 180.12828 * 15 14 13 17 17 N 1.36348 * 108.21820 * 359.62102 * 16 15 14 18 18 H 0.97004 * 125.63569 * 180.26281 * 17 16 15 19 19 C 1.34858 * 126.29153 * 90.00035 * 14 13 12 20 20 H 0.96998 * 119.99517 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47183 * 59.99769 * 9 7 2 22 22 H 1.08999 * 109.46942 * 299.99415 * 9 7 2 23 23 H 1.09003 * 109.46928 * 59.99946 * 10 9 7 24 24 H 1.08994 * 109.47342 * 299.99971 * 10 9 7 25 25 H 1.00905 * 111.00346 * 303.95151 * 11 10 9 26 26 H 1.08999 * 109.47317 * 59.99916 * 12 11 10 27 27 H 1.08999 * 109.47251 * 299.99820 * 12 11 10 28 28 H 1.08999 * 109.46937 * 59.99784 * 13 12 11 29 29 H 1.08999 * 109.46918 * 300.00124 * 13 12 11 30 30 H 1.07999 * 126.29093 * 359.97438 * 15 14 13 31 31 H 1.08002 * 125.89234 * 179.89015 * 16 15 14 32 32 H 1.07990 * 125.89063 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 2.4352 -6.0759 0.0018 13 6 1.6351 -7.3800 0.0031 14 6 2.5834 -8.5512 0.0031 15 6 3.1121 -9.1962 -1.1326 16 6 3.9114 -10.1909 -0.6963 17 7 3.9023 -10.1781 0.6671 18 1 4.3950 -10.7852 1.2412 19 6 3.0865 -9.1709 1.0901 20 1 -0.4849 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8719 -3.6043 0.8905 24 1 2.8719 -3.6044 -0.8894 25 1 0.8746 -4.9842 0.7828 26 1 3.0632 -6.0345 0.8917 27 1 3.0632 -6.0354 -0.8882 28 1 1.0068 -7.4217 -0.8867 29 1 1.0074 -7.4203 0.8933 30 1 2.9118 -8.9425 -2.1630 31 1 4.4667 -10.8763 -1.3194 32 1 2.8796 -8.9133 2.1182 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258915862.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:35 Heat of formation + Delta-G solvation = 28.065853 kcal Electronic energy + Delta-G solvation = -12631.280883 eV Core-core repulsion = 10398.807941 eV Total energy + Delta-G solvation = -2232.472942 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.04529 -36.22218 -33.45575 -32.19953 -29.98956 -28.93790 -26.85668 -23.95140 -21.82332 -20.83686 -20.47511 -19.18823 -18.00339 -16.23997 -15.35093 -14.48016 -14.29866 -13.95519 -13.69783 -13.54383 -13.14354 -12.88772 -12.24712 -12.08589 -11.57221 -11.40751 -11.07233 -10.85365 -10.62654 -10.48848 -9.87875 -9.33055 -9.10431 -8.66484 -8.29493 -8.11068 -7.68355 -5.94308 -3.96660 2.24676 2.98157 3.30170 3.37278 3.41222 3.43954 4.49008 4.91010 5.09018 5.15388 5.33857 5.41349 5.57693 5.67888 5.73183 5.97231 6.12468 6.22573 6.41467 6.45688 6.48859 6.58233 6.98804 7.07040 7.12734 7.53374 7.59409 7.81195 7.91570 8.07649 8.17146 8.50591 9.10618 9.66660 11.17196 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.086522 B = 0.004276 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.539409 B = 6545.966336 C = 6656.340483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.694 5.694 12 C 0.067 3.933 13 C -0.046 4.046 14 C -0.155 4.155 15 C -0.193 4.193 16 C -0.023 4.023 17 N -0.564 5.564 18 H 0.411 0.589 19 C -0.020 4.020 20 H 0.261 0.739 21 H 0.025 0.975 22 H 0.013 0.987 23 H 0.013 0.987 24 H 0.057 0.943 25 H 0.334 0.666 26 H 0.019 0.981 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.135 0.865 31 H 0.160 0.840 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 -19.493 1.660 20.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.325 5.325 12 C -0.063 4.063 13 C -0.084 4.084 14 C -0.163 4.163 15 C -0.218 4.218 16 C -0.154 4.154 17 N -0.159 5.159 18 H 0.247 0.753 19 C -0.150 4.150 20 H 0.070 0.930 21 H 0.044 0.956 22 H 0.032 0.968 23 H 0.031 0.969 24 H 0.075 0.925 25 H 0.151 0.849 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.152 0.848 31 H 0.178 0.822 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.407 -19.466 1.058 20.520 hybrid contribution 1.095 0.683 1.170 1.742 sum 7.502 -18.783 2.228 20.348 Atomic orbital electron populations 1.69967 1.06024 1.26638 1.50703 1.25004 0.94843 0.99174 0.95357 0.86647 0.79556 0.83138 0.78574 1.20221 1.21284 1.20329 1.21166 0.92961 0.91101 1.50820 0.92836 1.19074 0.94061 0.90445 0.97706 1.22135 0.96923 0.88617 0.98524 1.60590 1.20047 1.02261 1.49574 1.21890 0.94505 0.89962 0.99959 1.19931 0.95663 0.90293 1.02513 1.19565 1.03747 1.00402 0.92549 1.20904 1.03022 0.99049 0.98792 1.21810 1.06423 1.03921 0.83225 1.41938 1.38814 1.28164 1.07021 0.75297 1.21691 0.99934 0.94158 0.99219 0.92970 0.95626 0.96818 0.96858 0.92453 0.84898 0.96296 0.91559 0.90617 0.92010 0.84751 0.82243 0.82240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.67 5.23 -27.89 -0.15 0.52 16 10 C 0.07 1.48 5.62 -3.83 -0.02 1.46 16 11 N -0.69 -13.23 6.50 -113.79 -0.74 -13.97 16 12 C 0.07 1.07 5.67 -3.82 -0.02 1.05 16 13 C -0.05 -0.62 5.98 -27.88 -0.17 -0.79 16 14 C -0.16 -1.99 5.39 -104.82 -0.57 -2.55 16 15 C -0.19 -2.33 10.81 -39.78 -0.43 -2.76 16 16 C -0.02 -0.23 11.94 -16.75 -0.20 -0.43 16 17 N -0.56 -4.98 6.07 -12.85 -0.08 -5.06 16 18 H 0.41 2.22 8.96 -40.82 -0.37 1.85 16 19 C -0.02 -0.21 11.85 -16.75 -0.20 -0.41 16 20 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 21 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.33 6.05 8.73 -39.29 -0.34 5.70 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 276.83 15.07 4.17 4.17 Total: -1.00 -32.49 276.83 -7.99 -40.48 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -4.90 Total: 1.97 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -2.16 Total: -17.89 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.08 Total: -45.79 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.49 -7.99 -40.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258915862.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.546 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds