Wall clock time and date at job start Mon Mar 30 2020 02:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48503 * 109.47091 * 240.00390 * 3 2 1 5 5 H 1.48497 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47364 * 120.00415 * 3 2 1 7 7 C 1.37878 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99882 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47282 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.47385 * 179.97438 * 10 9 7 12 12 C 1.46901 * 111.00357 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47271 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47085 * 179.97438 * 13 12 11 15 15 C 1.40900 * 126.29168 * 270.29645 * 14 13 12 16 16 C 1.34850 * 107.41621 * 180.12828 * 15 14 13 17 17 N 1.36348 * 108.21820 * 359.62102 * 16 15 14 18 18 H 0.97004 * 125.63569 * 180.26281 * 17 16 15 19 19 C 1.34858 * 126.29153 * 90.00035 * 14 13 12 20 20 H 0.96998 * 119.99517 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47183 * 59.99769 * 9 7 2 22 22 H 1.08999 * 109.46942 * 299.99415 * 9 7 2 23 23 H 1.09003 * 109.46928 * 59.99946 * 10 9 7 24 24 H 1.08994 * 109.47342 * 299.99971 * 10 9 7 25 25 H 1.00905 * 111.00346 * 303.95151 * 11 10 9 26 26 H 1.08999 * 109.47317 * 59.99916 * 12 11 10 27 27 H 1.08999 * 109.47251 * 299.99820 * 12 11 10 28 28 H 1.08999 * 109.46937 * 59.99784 * 13 12 11 29 29 H 1.08999 * 109.46918 * 300.00124 * 13 12 11 30 30 H 1.07999 * 126.29093 * 359.97438 * 15 14 13 31 31 H 1.08002 * 125.89234 * 179.89015 * 16 15 14 32 32 H 1.07990 * 125.89063 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 2.4352 -6.0759 0.0018 13 6 1.6351 -7.3800 0.0031 14 6 2.5834 -8.5512 0.0031 15 6 3.1121 -9.1962 -1.1326 16 6 3.9114 -10.1909 -0.6963 17 7 3.9023 -10.1781 0.6671 18 1 4.3950 -10.7852 1.2412 19 6 3.0865 -9.1709 1.0901 20 1 -0.4849 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8719 -3.6043 0.8905 24 1 2.8719 -3.6044 -0.8894 25 1 0.8746 -4.9842 0.7828 26 1 3.0632 -6.0345 0.8917 27 1 3.0632 -6.0354 -0.8882 28 1 1.0068 -7.4217 -0.8867 29 1 1.0074 -7.4203 0.8933 30 1 2.9118 -8.9425 -2.1630 31 1 4.4667 -10.8763 -1.3194 32 1 2.8796 -8.9133 2.1182 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258915862.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:35 Heat of formation + Delta-G solvation = 6.042264 kcal Electronic energy + Delta-G solvation = -12632.235897 eV Core-core repulsion = 10398.807941 eV Total energy + Delta-G solvation = -2233.427956 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.83929 -37.78363 -35.33298 -33.73043 -31.39155 -30.12642 -28.19780 -25.85681 -23.16338 -22.46594 -21.59603 -20.06069 -18.82642 -18.48372 -16.90599 -16.47230 -15.56955 -15.12314 -14.92767 -14.62840 -14.43752 -14.26865 -13.84729 -13.34630 -13.14315 -12.85044 -12.71839 -12.60786 -12.36300 -12.04770 -11.63237 -11.40210 -11.24990 -10.54969 -9.52508 -9.25734 -8.94212 -8.19144 -6.31131 1.41098 1.44946 1.46096 1.52933 2.07856 2.41952 2.63175 3.13852 3.46647 4.14953 4.35663 4.46239 4.47759 4.56568 4.60383 4.65833 4.76580 4.81574 5.06769 5.13125 5.26082 5.32593 5.45791 5.59684 5.68388 5.79754 6.11373 6.15871 6.27731 6.29970 6.59766 6.85801 6.90436 7.38001 8.92973 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.086522 B = 0.004276 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.539409 B = 6545.966336 C = 6656.340483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.700 5.700 12 C 0.073 3.927 13 C -0.034 4.034 14 C -0.187 4.187 15 C -0.228 4.228 16 C -0.012 4.012 17 N -0.552 5.552 18 H 0.430 0.570 19 C -0.019 4.019 20 H 0.265 0.735 21 H -0.006 1.006 22 H -0.007 1.007 23 H 0.018 0.982 24 H 0.054 0.946 25 H 0.340 0.660 26 H 0.024 0.976 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.130 0.870 31 H 0.192 0.808 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.184 -20.225 2.263 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.045 4.045 11 N -0.331 5.331 12 C -0.056 4.056 13 C -0.073 4.073 14 C -0.195 4.195 15 C -0.253 4.253 16 C -0.143 4.143 17 N -0.148 5.148 18 H 0.269 0.731 19 C -0.151 4.151 20 H 0.073 0.927 21 H 0.013 0.987 22 H 0.012 0.988 23 H 0.036 0.964 24 H 0.073 0.927 25 H 0.157 0.843 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.148 0.852 31 H 0.209 0.791 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 8.048 -20.238 1.676 21.844 hybrid contribution 0.572 0.827 0.978 1.403 sum 8.621 -19.411 2.654 21.405 Atomic orbital electron populations 1.70106 1.07855 1.27926 1.51280 1.26000 0.95803 1.03434 0.94521 0.85446 0.78230 0.77812 0.79211 1.19171 1.20657 1.19068 1.21598 0.93541 0.92312 1.51202 0.92195 1.18933 0.94315 0.92259 0.95146 1.21769 0.95628 0.88595 0.98539 1.60504 1.20599 1.01905 1.50110 1.21890 0.94218 0.89787 0.99681 1.19756 0.95585 0.89566 1.02377 1.19593 1.05026 1.01022 0.93823 1.21092 1.04765 1.00667 0.98751 1.22252 1.05144 1.03164 0.83773 1.41981 1.38024 1.27708 1.07099 0.73135 1.21960 0.99453 0.94034 0.99617 0.92674 0.98734 0.98825 0.96401 0.92747 0.84257 0.95727 0.92463 0.91756 0.91133 0.85186 0.79110 0.80379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.08 13.29 21.45 0.28 -57.79 16 2 C 0.00 0.02 5.46 84.65 0.46 0.49 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -32.35 9.11 25.60 0.23 -32.11 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.72 5.23 29.85 0.16 1.88 16 10 C 0.08 3.77 5.62 86.30 0.49 4.25 16 11 N -0.70 -26.82 6.50 -513.91 -3.34 -30.16 16 12 C 0.07 2.32 5.67 86.30 0.49 2.81 16 13 C -0.03 -0.93 5.98 29.85 0.18 -0.75 16 14 C -0.19 -4.62 5.39 -19.99 -0.11 -4.73 16 15 C -0.23 -5.31 10.81 22.14 0.24 -5.07 16 16 C -0.01 -0.20 11.94 83.21 0.99 0.79 16 17 N -0.55 -8.22 6.07 -194.56 -1.18 -9.40 16 18 H 0.43 3.23 8.96 -92.71 -0.83 2.39 16 19 C -0.02 -0.37 11.85 83.22 0.99 0.62 16 20 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 21 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 22 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 23 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.34 12.36 8.73 -89.69 -0.78 11.57 16 26 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 31 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 32 H 0.18 2.68 8.06 -2.92 -0.02 2.66 16 Total: -1.00 -69.71 276.83 1.39 -68.32 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -0.51 Total: 13.78 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 4.12 Total: -31.82 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -4.24 Total: -97.35 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -69.71 1.39 -68.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258915862.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.362 kcal (2) G-P(sol) polarization free energy of solvation -69.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds